Biochemistry : Catabolic Pathways and Metabolism

Study concepts, example questions & explanations for Biochemistry

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Example Questions

Example Question #2 : Citric Acid Cycle Energetics

Suppose that in a certain neuron, an action potential has caused  ions to enter the cell. In order to restore the resting membrane potential, the sodium-potassium pump uses 1 molecule of ATP to push  ions out of the cell and to bring  ions into the cell. How many molecules of acetyl-CoA must pass through the citric acid cycle in order to provide enough energy for this process to occur?

Possible Answers:

Correct answer:

Explanation:

This question is providing us with a scenario in which  ions enter a cell. We're further told that it will take a single molecule of ATP to move three of these ions out of the cell. Finally, we are being asked to determine the total number of acetyl-CoA molecules that must pass through the Krebs cycle in order to provide the energy necessary for the export of these  ions.

First, we'll need to determine the total number of ATP molecules generated from the passage of a single molecule of acetyl-CoA through the Krebs cycle. It's important to remember that the passage of acetyl-CoA through the Krebs cycle generates one molecule of ATP directly by substrate-level phosphorylation, but it also produces other intermediate energy carriers in the form of  and .

For each acetyl-CoA ran through the cycle, one molecule of  and three molecules of  are produced. Furthermore, each molecule of  will go on to donate its electrons to the electron transport chain to generate  molecules of ATP per molecule of  oxidized. Likewise, each  will also produce ATP via oxidative phosphorylation, but at a rate of  molecules of ATP per molecule of  oxidized.

Adding these up, we obtain:

 ATP via substrate-level phosphorylation

Adding these values up, we have a total of  molecules of ATP produced for every molecule of acetyl-CoA oxidized. Now that we know how much ATP is produced from one acetyl-CoA, we can calculate the number needed to move the  ions out of the cell.

Example Question #3 : Citric Acid Cycle Energetics

Which of the following steps within the citric acid cycle directly produces ATP (or GTP) as a side product? 

Possible Answers:

The conversion of alpha-ketoglutarate to succinyl-CoA

The conversion of succinyl-CoA to succinate 

The conversion of fumarate to malate

The conversion of citrate to cis-aconitate

The conversion of malate to oxaloacetate

Correct answer:

The conversion of succinyl-CoA to succinate 

Explanation:

The only step of the citric acid cycle (also known as the Krebs cycle, or the TCA cycle) that directly produces ATP or GTP is the conversion of succinyl-CoA to succinate. 

In this reaction, succinyl-CoA is converted to succinate with the assistance of the enzyme, succinyl-CoA synthetase. During this reaction, ADP + Pi (or GDP + Pi) is also converted to ATP (or GTP) using the energy from the breaking of the bond between CoA and succinate. Thus, the overall reaction appears as:

While side products of some of the other reactions listed produce intermediaries that may be used to produce ATP in the future, these reactions do not directly produce ATP.

Example Question #947 : Biochemistry

Which of the following steps within the citric acid cycle does not produce  as a side product?

Possible Answers:

The conversion of isocitrate to alpha-ketoglutarate

All of these steps produce 

The conversion of fumarate to malate

The conversion of malate to oxaloacetate

The conversion of alpha-ketoglutarate to succinyl-CoA

Correct answer:

The conversion of fumarate to malate

Explanation:

The only citric acid cycle (also known as the Krebs cycle or TCA cycle) step listed that does not result in the production of  as a side product is the conversion of fumarate to malate. 

In the conversion of fumarate to malate, fumarate is chemically combined with water in the presence of the enzyme fumarase to produce malate. In this conversion, there is no concomitant production of .

In each of the other reactions listed,  is converted to  and  as side products.  

Example Question #948 : Biochemistry

Which of the following steps of the citric acid cycle results in the production of  as a side product?

Possible Answers:

None of the answers listed result in the production of  as a side product.

The conversion of alpha-ketoglutarate to succinyl-CoA

The conversion of succinyl-CoA to succinate 

The conversion of malate to oxaloacetate

The conversion of isocitrate to alpha-ketoglutarate 

Correct answer:

None of the answers listed result in the production of  as a side product.

Explanation:

The correct answer is that none of the citric acid cycle steps listed result in the production of . The only step of the citric acid cycle that results in the production of  is the conversion of succinate to fumarate (catalyzed by succinate dehydrogenase). In this reaction,  is concomitantly converted to  using the hydrogen molecules removed from succinate by succinate dehydrogenase. This reaction was not listed in the answer choices though, and therefore none of the reactions listed produced .

Each of the reactions listed did produce other side products. The conversions of isocitrate to alpha-ketoglutarate, alpha-ketoglutarate to succinyl-CoA, and malate to oxaloacetate all result in the production of  as a side product, but not . The conversion of succinyl-CoA to succinate results in the production of ATP or GTP and CoA-SH as side products, but not

Example Question #221 : Catabolic Pathways And Metabolism

Which of these molecules is not a product of the citric acid cycle?

Possible Answers:

Flavin mononucleotide (FMN)

NADH

CO2

Ubiquinol (QH2)

Pyruvate

Correct answer:

Flavin mononucleotide (FMN)

Explanation:

Flavin mononucleotide (FMN) is not produced by the citric acid cycle. This flavin coenzyme is a reactant, but not a product, since FMN will get reduced to FMNH2.

The rest of the answer choices are products of the citric acid cycle (otherwise known as the Krebs cycle). 

Example Question #2 : Reactants And Products Of The Citric Acid Cycle

What is pyruvate converted to before it enters the citric acid cycle?

Possible Answers:

Acetyl-CoA

Acetate

Glucose

Correct answer:

Acetyl-CoA

Explanation:

Pyruvate is the end product of glycolysis. After glycolysis, the three-carbon molecule pyruvate is converted into the two-carbon molecule acetyl-coenzyme A (acetyl-CoA). This is carried out by a combination of three enzymes collectively known as the pyruvate dehydrogenase complex. The conversion of pyruvate to acetyl-CoA also produces one molecule of . Acetyl-CoA has one less carbon than pyruvate. The third carbon from pyruvate is lost as carbon dioxide () during the conversion of pyruvate to acetyl-CoA. Recall that since glucose is a six-carbon molecule, two molecules of pyruvate (three carbons each) are formed via glycolysis.

Example Question #3 : Reactants And Products Of The Citric Acid Cycle

The first reaction of the citric acid cycle is an aldol condensation involving which two molecules?

Possible Answers:

Oxaloacetate and malate

Acetyl-CoA and oxaloacetate

 and acetyl-CoA

 and pyruvate

Correct answer:

Acetyl-CoA and oxaloacetate

Explanation:

Pyruvate is produced in the last step of glycolysis, then, it is converted to the two-carbon molecule acetyl-coenzyme A (acetyl-CoA). This is carried out by a combination of three enzymes collectively known as the pyruvate dehydrogenase complex. The conversion of pyruvate to acetyl-CoA produces one . Acetyl-CoA has one less carbon than pyruvate. The third carbon of pyruvate is lost as carbon dioxide () during the conversion of pyruvate to acetyl-CoA. The citric acid cycle begins when the four-carbon molecule, oxaloacetate combines with acetyl-CoA (a two carbon molecule) via an aldol condensation, yielding the six-carbon molecule citrate.

Example Question #224 : Catabolic Pathways And Metabolism

At what step is  produced during the citric acid cycle? 

Possible Answers:

During conversion of succinate into fumarate by succinate dehydrogenase

During conversion of succinate into fumarate by succinate dehydrogenase

During conversion of citric acid into isocitrate by acontinase

During conversion of oxaloacetate and acetyl-CoA to form citric acid by citrate synthase

Correct answer:

During conversion of succinate into fumarate by succinate dehydrogenase

Explanation:

During the conversion of succinate into fumarate by succinate dehydrogenase, a single molecule of  is reduced to  as it accepts the hydrogens from succinate.  then feeds its electrons into the electron transport chain in the inner mitochondrial membrane.

Example Question #1 : Reactants And Products Of The Citric Acid Cycle

In the Krebs cycle, which step involves the formation of GTP?

Possible Answers:

Succinate  fumarate 

Isocitrate  alpha-ketoglutarate

Succinyl-CoA  succinate 

Alpha-ketoglutarate  succinyl-CoA

None of these, GTP is not a product of Krebs cycle

Correct answer:

Succinyl-CoA  succinate 

Explanation:

Succinyl-CoA synthetase performs substrate level phosphorylation at this step in the Krebs cycle, such that .

Example Question #2 : Reactants And Products Of The Citric Acid Cycle

From a single molecule of glucose, two molecules of pyruvate are formed which can be converted into two acetyl-CoA molecules to enter the citric acid cycle.

Starting from a single molecule of glucose, how many molecules of NADH are formed in a single turn of the citric acid cycle including the conversion of pyruvate into acetyl-CoA? Do not include NADH formed during glycolysis, which is not part of the citric acid cycle.

Possible Answers:

Correct answer:

Explanation:

The conversion of pyruvate to acetyl-CoA produces one molecule of NADH, but remember that each glucose yields two pyruvates, so the total NADH from this first step is two. Within the citric acid cycle, there are three steps in which NADH is a byproduct, but again we must remember that each step occurs to two molecules, therefore three NADH byproducts for two molecules yields six NADH in the cycle proper. Therefore, the total NADH produced in one turn of the citric acid cycle is eight NADH. 

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