Biochemistry : Biochemistry

Study concepts, example questions & explanations for Biochemistry

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Example Questions

Example Question #11 : Michaelis Menten Equation

Based on Michaelis-Menten enzyme kinetics, if a system has a substrate concentration that is significantly more then the Km, which of the following is a sound inference?

Possible Answers:

The enzyme is the limiting factor of the reaction rate, adding more substrate would increase the reaction rate.

The system is fully saturated and the rate is below Vmax. 

The substrate is the limiting factor. The system is not saturated. 

The system is not saturated, adding more enzyme would increase the Vmax. 

The enzyme concentration is the limiting factor of the reaction rate, adding more substrate would not increase the rate. 

Correct answer:

The enzyme concentration is the limiting factor of the reaction rate, adding more substrate would not increase the rate. 

Explanation:

With Michaelis-Menten Kinetics, The Vmax is the maximum rate of the enzyme mediated reaction. When a system has a concentration of substrate well above Km (which is the concentration of substrate at which the reaction is proceeding at one-half Vmax), then it is said that the system is saturated. In this state, the reaction is occurring basically at Vmax, since there is plenty of substrate to react with the enzyme, and adding more substrate would not increase the reaction rate. Rather, the concentration of enzyme is the limiting factor of how much reaction product will be produced per unit time.

Example Question #1 : Michaelis Menten Graphs

In a Lineweaver-Burk plot, the slope is __________.

Possible Answers:

Correct answer:

Explanation:

A Lineweaver-Burk is a double-reciprocal of the Michaelis-Menten equation. The equation for the graph, in  form is: 

From this graph, we can see that the slope is .

Example Question #1 : Michaelis Menten Graphs

In a Michaelis-Menten plot of enzyme kinetics, the reaction rate is plotted as a function of substrate concentration. Why is it that as substrate concentration increases, the curve of the graph levels off and reaches a plateau?

Possible Answers:

All of the substrate has been converted into product

This only happens when a competitive inhibitor is present

This only happens when a non-competitive inhibitor is present

The enzyme becomes degraded

The enzyme becomes saturated

Correct answer:

The enzyme becomes saturated

Explanation:

In a classic Michaelis-Menten graph, the y-axis represents reaction rate and the x-axis represents substrate concentration. At low substrate concentrations, the reaction rate increases sharply. But as the substrate concentration climbs, the reaction rate begins to increase less and less until it comes to a point where it plateaus into a flat line.

The reason this happens is because the enzyme becomes saturated with substrate. When substrate concentration is low, many of the enzymes in solution aren't doing anything, so they're readily available to convert substrate into product. Thus, adding even just a little bit of substrate will result in a dramatically increased reaction rate. When a high concentration of substrate is present, all of the enzymes in solution are busy. In other words, as soon as an enzyme converts a substrate into product, it immediately becomes occupied with another substrate. Since this process can't occur any faster unless more enzymes are added, all of the other substrate in solution have to wait their turn. Thus, any increase in substrate concentration under these circumstances results in very little, if any, increase in reaction rate.

Example Question #1 : Michaelis Menten Graphs

Where on a Michaelis-Menten graph is the slope of reaction velocity linear?

Possible Answers:

When enzyme concentration is low

When enzyme concentration is high

When substrate concentration is low

It is never linear

When substrate concentration is high

Correct answer:

When substrate concentration is low

Explanation:

When substrate concentration is high, all of the active sites can be constantly occupied by enzyme.  Further, the active sites can be saturated by enzyme when concentration is very high.  But, when the concentration of substrate is low, the reaction velocity is considered to be linear.

Example Question #71 : Enzyme Kinetics And Inhibition

On a Lineweaver-Burk plot, which of the following is correct?

Possible Answers:

X intercept =

Slope =

Y-intercept = 

X-axis is 

Slope = 

Correct answer:

Slope = 

Explanation:

On a Lineweaver-Burk plot, the following are the correct matches regarding points of importance?

X-axis = 

Y-axis = 

X-intercept = 

Y-intercept = 

Slope = 

Example Question #1 : Michaelis Menten Graphs

In the presence of a competitive inhibitor, which of the following changes will always be observed on the Lineweaver-Burk plot?

Possible Answers:

The lines will always be exactly the same

The y-intercept for the uninhibited line will be higher than that for the inhibited line

The x-intercept will be closer to the origin for the uninhibited line that for that of the inhibited line

The y-intercept will be the same for the inhibited and uninhibited line

The x-intercept of the inhibited line will be the same for both lines

Correct answer:

The y-intercept will be the same for the inhibited and uninhibited line

Explanation:

 will remain the same for an inhibited enzyme when a competitive inhibitor is used. With this information, one can figure out what will happen to the line for an inhibited enzyme on a Lineweaver Burk plot. The y-intercept represents  on these graphs, and so in the presence of a competitive inhibitor, the y-intercept will remain unchanged for an inhibited enzyme. The x-intercept represents . A competitive inhibitor will raise , and so the inhibited enzyme's x-intercept will be closer to the origin.

Example Question #1 : Vmax And Km

There are at least four types of glucose transporter in the body. GLUT1 and GLUT3 are located in most tissues including the brain and the red blood cells. These glucose transporters rapidly take up glucose from the blood but have the lowest  value. GLUT2 is commonly found in the liver and the pancreas. GLUT2 has a lower affinity for glucose but has the highest  value. GLUT4 is common in skeletal tissues and in adipose tissues. This transporter is normally not active for uptake unless stimulated by insulin or during exercise.  

What might be a consequence of a disease that replaces all GLUT2 with GLUT1? 

Possible Answers:

None of these

All of these

Hyperinsulinemia

Hypoglycemia

Hyperglycemia

Correct answer:

Hypoglycemia

Explanation:

GLUT2 have a lower affinity for glucose and is essential for the liver and the pancreas to regulate the blood glucose level. With a lower affinity transporter, glucose will not be taken up immediately by the liver/pancreas while reserving for the high glucose demanding organs (e.g brain, neurons, red blood cells). Therefore, if one were to inherit such disease, extreme hypoglycemia may occur.   

Example Question #32 : Enzyme Kinetics And Models

There are at least four types of glucose transporter in the body. GLUT1 and GLUT3 are located in most tissues including the brain and the red blood cells. These glucose transporters rapidly take up glucose from the blood but have the lowest  value. GLUT2 is commonly found in the liver and the pancreas. GLUT2 has a lower affinity for glucose but has the highest  value. GLUT4 is common in skeletal tissues and in adipose tissues. This transporter is normally not active for uptake unless stimulated by insulin or during exercise.  

Sam is performing an experiment and he wants to use the glucose transporter with the lowest  value. Which type of glucose transporter should he use? 

I. GLUT1

II. GLUT2

III. GLUT3

IV. GLUT4

Possible Answers:

II only

III only

I and III

I and II

I only

Correct answer:

I and III

Explanation:

GLUT1 and GLUT3 have the highest affinity for glucose. The Michaelis constant,  is the concentration of the substrate required to reach . The lower the , the higher the affinity is for the substrate.  

Example Question #1 : Vmax And Km

You are measuring the activity of an enzyme in solution and notice that enzyme activity increases with increasing substrate concentration to a certain point, after which enzyme activity does not increase even if you add more substrate. What is this called and what can be done to increase activity?

Possible Answers:

This is called the  and adding more enzyme concentration will increase activity.

This is called the maximal velocity and increasing the enzyme concentration will increase activity.

This is called the rate constant and increasing the concentration of the product will increase activity.

This is called the maximal velocity and decreasing the concentration of the production will increase activity.

This is called the rate constant and adding more enzyme will increase activity.

Correct answer:

This is called the maximal velocity and increasing the enzyme concentration will increase activity.

Explanation:

The enzyme in this question is said to be saturated with substrate. That means that at any given moment, all of the enzyme in solution is bound to a substrate so that adding more substrate will have no effect. This is referred to as the maximal velocity because the enzymes are working as fast as possible and will not respond to the addition of more substrate. By adding more enzyme, you a providing more active site to bind to more substrate molecules, effectively increasing the velocity of the overall reaction.

Example Question #1 : Vmax And Km

What does a small  indicate?

Possible Answers:

The enzyme has a low affinity for its substrate

That high substrate concentrations are needed to achieve maximum reaction velocity

That the enzyme requires only a small amount of substrate to become saturated

That the enzyme requires a large amount of substrate to become saturated

Correct answer:

That the enzyme requires only a small amount of substrate to become saturated

Explanation:

In enzyme kinetics,  is the concentration of substrate which allows the enzyme to reach  (maximum reaction velocity). A small  indicates that only a small amount of substrate is needed for the enzyme to become saturated and thus for the reaction to reach maximum velocity. This also indicates that the enzyme and substrate have high affinity for one another. A large  indicates that a large amount of substrate is needed for the enzyme to become saturated and thus for the reaction to reach maximum velocity.

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