MCAT Biology : Proteins

Study concepts, example questions & explanations for MCAT Biology

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Example Questions

Example Question #3 : Enzymes And Enzyme Inhibition

Drain cleaners a common household staple, used to open clogged drains in bathtubs and sinks. Human hair is a common culprit that clogs pipes, and hair is made predominately of protein. Drain cleaners are effective at breaking down proteins that have accumulated in plumbing. Drain cleaners can be either acidic or basic, and are also effective at breaking down fats that have accumulated with proteins.

A typical reaction—reaction 1—which would be expected for a drain cleaner on contact with human hair, would be as follows in an aqueous solution:

Pic_1

Another reaction that may occur, reaction 2, would take place as follows in an aqueous solution:

Pic_2

Protein that forms the hair discussed in the preceeding passage is considered strucutral protein.  Functional proteins, such as enzymes, are the other major class. Which of the following is expected in an enzymatic biological reaction?

I. Faster rate than non-enzymatic reaction

II. Enzymatic coupling to hydrolysis reactions

III. More product generation relative to amount of reactant than non-enzymatic reaction

Possible Answers:

I and II

II, only

I, II, and III

I, only

I and III, only

Correct answer:

I and II

Explanation:

Enzymatic reactions will always proceed faster than if there was no enzyme present. They will also often be coupled to hydrolysis reactions to drive them forward thermodynamically, such as ATP hyrodlysis to make an otherwise unfavorable reaction proceed. The equilibrium constant of an enzymatic reaction is never different than the constant for the same reaction without enyzme, however, and thus choice III is incorrect.

Example Question #1 : Enzymes And Enzyme Inhibition

A student observes an enzymatic chemical reaction that normally takes place in human blood. She performs an experiment to see how certain conditions affect the reaction with the enzyme fully saturated with substrate. What should she do to speed the reaction up?

Possible Answers:

Increase the enzyme concentration

Increase the temperature to 40 degrees Celsius

Make the pH 7.0

Add more substrate

Remove some of the enzyme

Correct answer:

Increase the enzyme concentration

Explanation:

Adding more enzyme is the only way to make this reaction proceed faster. Since this is a reaction that takes place in the blood, the optimal conditions are 37 degrees Celsius and a pH of 7.4. Adding more substrate could help in certain conditions, but we know from the question that there is no free enzyme in the reaction so adding more would not help. Removing enzyme would obviously sow the reaction down.

Example Question #2 : Enzymes And Enzyme Inhibition

In order to catalyze a reaction, an enzyme is required to __________.

Possible Answers:

decrease the activation energy

increase the equilibrium constant

be saturated with substrate

increase the activation energy

Correct answer:

decrease the activation energy

Explanation:

Enzymes are biological catalysts that are responsible for the acceleration of the rate and specificity of many metabolic reactions. In order for rate acceleration to occur, an enzyme lowers the activation energy of a reaction. This allows for products to be formed more quickly and reactions to reach equilibrium more rapidly. Substrates bind to the active site of an enzyme and, in the presence of a large concentration of substrate, enzyme active sites become saturated and the reaction rate reaches a maximum constant. The equilibrium constant is calculated from the expression for chemical equilibrium, and is not affected by enzymes. Thus, the correct answer is to decrease the activation energy.

Example Question #3 : Enzymes And Enzyme Inhibition

Fetal hemoglobin has a higher binding affinity for oxygen than does adult hemoglobin.

 In comparison to the adult oxyhemoglobin dissociation curve, the fetal oxyhemoglobin dissociation curve will __________.

Possible Answers:

be shifted to the right and display a higher Km

be shifted to the left and display a lower Km

be shifted to the left and display a higher Km

be shifted to the right and display a lower Km

Correct answer:

be shifted to the left and display a lower Km

Explanation:

Fetal hemoglobin is associated with a left-shift due to its greater binding affinity for oxygen. The Michaelis constant, Km, is defined as the substrate concentration at which the reaction rate is 0.5 * Vmax. A low Km indicates high substrate affinity. 

Example Question #7 : Enzymes And Enzyme Inhibition

Which of the following is NOT a class of enzyme?

Possible Answers:

Isomerase

Hydrolase

Transferase

Ligase

Pyrimidine complex

Correct answer:

Pyrimidine complex

Explanation:

The correct answer is pyrimidine complex. A pyrimidine refers to a type of nucleotide base. Enzymes commonly have the suffix -ase at the end of their name.

Example Question #11 : Enzymes And Enzyme Inhibition

Functions of enzymes include all of the following except __________.

Possible Answers:

catalyzing both forward and reverse reactions

shifting the equilibrium of a reaction

decreasing the activation energy of a reaction

shifting substrates into more favorable positions in the active site

lessening the time required for a reaction to take place

Correct answer:

shifting the equilibrium of a reaction

Explanation:

Enzymes are unable to shift the equilibrium of a reaction. This is a commonly confused enzyme concept, but it should be known that, chemically speaking, only adding or removing reactants and/or products can shift the equilibrium of a reaction. Although this concept is mainly seen in chemisty, known as Le Chatelier's principle, this principle is surprisingly helpful and applicable to many fields of science, including biology. All other answer choices are functions of enzymes.

Example Question #51 : Proteins

Which of the following would most greatly increase the activity of an enzyme functioning in the small intestine?

Possible Answers:

Decrease the temperature

Decrease the pH

Increase the amount of enzymes

Increase the amount of substrate

Correct answer:

Increase the amount of substrate

Explanation:

The rate of enzymatic activity can be increased in a few ways. Enzymes have optimal levels of acidity and temperature at which they function best. If this optimal level is exceeded, the enzyme will denature. Enzymes of the small intestine are adjusted to a relatively alkaline environment and will denature in acidic environments. Decreasing the temperature would decrease the rate of catalyzation. By increasing the amount of substrate, the enzyme will function faster. The level at which an enzyme's rate of catalyzation can no longer be made faster by the addition of substrate is referred to as its Vmax.

Example Question #223 : Organic Chemistry, Biochemistry, And Metabolism

Among the most important pH buffer systems in humans is the bicarbonate buffer, which keeps the blood at a remarkably precise 7.42 pH.  The bicarbonate buffer system uses a series of important compounds and enzymes to make the system function.  Figure 1 depicts the key reactions that take place.

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The activity of this buffer system is mainly controlled by the renal and respiratory systems.  The renal system excretes bicarbonate in the urine, while the respiratory system “blows off” carbon dioxide as needed.   By balancing these two systems as needed, blood pH is maintained in such a narrow range.

 

Carbonic anhydrase exhibits typical enzyme kinetics expected of similar enzymes. Which of the following is the quantity described by the value Km?

Possible Answers:

The half maximum reaction rate with enzyme catalysis

The substrate concentration necessary to achieve half maximum reaction rate

The volume of inhibitor necessary to reduce the catalyzed reaction rate by half

The time it takes to reach half maximum reaction rate under standard conditions

The enzyme concentration necessary to achieve half maximum reaction rate

Correct answer:

The substrate concentration necessary to achieve half maximum reaction rate

Explanation:

Reaction rates are generally impacted by the concentration of the reactants in the reaction. The Km is the amount of substrate needed to attain a concentration resulting in half of the maximum rate achievable by an ezyme catalyzed reaction.

The maximum rate will be limited by the number of enzyme moleules available, and will be reached when the enzyme active sites are saturated.

Example Question #224 : Organic Chemistry, Biochemistry, And Metabolism

Scientists use a process called Flourescent In-Situ Hybridization, or FISH, to study genetic disorders in humans. FISH is a technique that uses spectrographic analysis to determine the presence or absence, as well as the relative abundance, of genetic material in human cells. 

To use FISH, scientists apply fluorescently-labeled bits of DNA of a known color, called probes, to samples of test DNA. These probes anneal to the sample DNA, and scientists can read the colors that result using laboratory equipment. One common use of FISH is to determine the presence of extra DNA in conditions of aneuploidy, a state in which a human cell has an abnormal number of chromosomes. Chromosomes are collections of DNA, the totality of which makes up a cell’s genome. Another typical use is in the study of cancer cells, where scientists use FISH labels to ascertain if genes have moved inappropriately in a cell’s genome.

Using red fluorescent tags, scientists label probe DNA for a gene known to be expressed more heavily in cancer cells than normal cells. They then label a probe for an immediately adjacent DNA sequence with a green fluorescent tag. Both probes are then added to three dishes, shown below.  In dish 1 human bladder cells are incubated with the probes, in dish 2 human epithelial cells are incubated, and in dish 3 known non-cancerous cells are used. The relative luminescence observed in regions of interest in all dishes is shown below.

 

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Cancer cells often invade by breaking through the collagen of a basement membrane of epithelial tissue. Considering the composition of basement membranes, which of the following compounds is most likely to be used by cancer cells for this purpose?

Possible Answers:

Protease

Amylase

Synthase

Peroxidase

Lipase

Correct answer:

Protease

Explanation:

The basement membrane and sub-basement structures are predominately made of protein (connective tissue). To infiltrate this region, a protease would be most appropriate. The remaining choices are all enzymes, but would not be capable of digesting appropriate proteins.

Example Question #11 : Enzymes And Enzyme Inhibition

Which amino acid has a side chain that can form covalent bonds?

Possible Answers:

Histidine

Cysteine

Isoleucine

Leucine

Glycine

Correct answer:

Cysteine

Explanation:

Cysteine has a sulfide (-SH) in its side chain, which can form covalent disulfide bonds. These bonds are often integral in creating protein tertiary structures.

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