MCAT Biology : Organic Chemistry, Biochemistry, and Metabolism

Study concepts, example questions & explanations for MCAT Biology

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Example Questions

Example Question #91 : Organic Chemistry, Biochemistry, And Metabolism

Approximately where would a carbonyl peak be found on an IR spectrum?

Possible Answers:

1000cm-1

1700cm-1

2800cm-1

The peak location will vary depending on the compound being analyzed.

Correct answer:

1700cm-1

Explanation:

It is important to memorize a couple key functional groups, and where they are located on an IR spectrum. If you see a sharp peak near 1700cm-1, you can assume it is made by a carbonyl group. 

Similarly, a wide peak around 3000cm-1 will be made by a hydroxyl group.

Example Question #92 : Organic Chemistry, Biochemistry, And Metabolism

The visible spectrum is typically between 390-700nm. Shorter wavelengths are responsible for the purple end of the color spectrum, while red is perceived in the eye from the longer wavelengths. -carotene is able to absorb light at a maximum value of 497nm.

-carotene is found in carrots. What would need to happen to -carotene in order for the color of carrots to become more yellow?

Possible Answers:

The number of amount of double bonds must be increased

The number of amount of conjugated double bonds must be reduced

The -carotene must become less saturated

The amount of -carotene in carrots must be reduced

Correct answer:

The number of amount of conjugated double bonds must be reduced

Explanation:

The wavelength of light absorbed by a pigment is related to the number of conjugated double bonds in the molecule. The eye will begin to perceive color when the number of conjugated double bonds in a molecule becomes around eight. At this point, the color yellow can be perceived by the eye. In order for -carotene to give carrots a more yellowish color, it must have a change in the number of conjugated double bonds so that the pigment absorbs a shorter wavelength of light. This way, it will emit complementary light with a wavelength closer to yellow on the visible spectrum.

Example Question #1 : Compound Purification

To isolate DNA from a cell pellet, a student is performing an extraction using phenol and chloroform. The cells were lysed with 0.5mL of lysis buffer. 0.5mL extraction solution, consisting of phenol:chloroform:isoamyl alcohol (25:24:1), was added to the lysate. The sample was centrifuged at high speed for five minutes. The liquid in the tube was separated into three phases after centrifugation (see diagram).

Phenol_chloroform

In which layer will nucleic acids (RNA and DNA) be found?

Possible Answers:

Cannot be determined

3

1

2

Correct answer:

1

Explanation:

RNA and DNA are hydrophilic substances, and will be found in the aqueous layer after the cells are lysed. Based on molecular weights of water (18), phenol (94), and chloroform (119), it is evident that the aqueous layer will be on the top, denoted as layer 1.

Example Question #2 : Compound Purification

To isolate DNA from a cell pellet, a student is performing an extraction using phenol and chloroform. The cells were lysed with 0.5mL of lysis buffer. 0.5mL extraction solution, consisting of phenol:chloroform:isoamyl alcohol (25:24:1), was added to the lysate. The sample was centrifuged at high speed for five minutes. The liquid in the tube was separated into three phases after centrifugation (see diagram).

In which layer will lipids and other cellular debris be found?

Possible Answers:

1

Cannot be determined

2

3

Correct answer:

3

Explanation:

Lipids and other cellular debris are hydrophobic, and can be dissolved in the organic (bottom) layer. We know that the organic solvents will settle in layer 3 due to their relative densities compared to water. Phenol and chloroform are heavier molecules than water, with molecular weights of 94 and 119 respectively, and will thus be found in the bottom layer.

Example Question #3 : Compound Purification

To isolate DNA from a cell pellet, a student is performing an extraction using phenol and chloroform. The cells were lysed with 0.5mL of lysis buffer. 0.5mL extraction solution, consisting of phenol:chloroform:isoamyl alcohol (25:24:1), was added to the lysate. The sample was centrifuged at high speed for five minutes. The liquid in the tube was separated into three phases after centrifugation (see diagram).

Phenol_chloroform

What is the nature of each phase?

Possible Answers:

1: Phenol

2: Chloroform

3: Isoamyl alcohol

1: Organic

2: Interphase

3: Aqueous

1: Aqueous

2: Interphase

3: Organic

1: Phenol

2: Isoamyl alcohol

3: Chloroform

1: Chloroform

2: Isoamyl alcohol

3: Phenol

Correct answer:

1: Aqueous

2: Interphase

3: Organic

Explanation:

The purpose of a phenol:chloroform extraction is to separate organic and aqueous cellular components. The lysis buffer is an aqueous solution, while the phenol:chloroform extraction solution is organic. Generally, organic solutions are more dense that aqueous solutions, resulting in the aqueous solution being on the top and organic being on the bottom. The interphase consists of proteins containing both hydrophilic and hydrophobic domains.

You can also determine relative density by calculating the molecular weights of the solvents. Doing so will show that water (MW = 18) is much lighter than phenol (MW = 94) or chloroform (MW = 119).

Example Question #3 : Compound Purification

To isolate DNA from a cell pellet, a student is performing an extraction using phenol and chloroform. The cells were lysed with 0.5mL of lysis buffer. 0.5mL extraction solution, consisting of phenol:chloroform:isoamyl alcohol (25:24:1), was added to the lysate. The sample was centrifuged at high speed for five minutes. The liquid in the tube was separated into three phases after centrifugation (see diagram).

In which layer will proteins be found?

Possible Answers:

1

3

Cannot be determined

Both 1 and 3

2

Correct answer:

2

Explanation:

Proteins generally contain both hydrophobic and hydrophilic domains, and therefore, do not completely associate with either the organic or aqueous layers. They can be found in the interphase layer, denoted as layer 2. This allows different domains of the protein to interact with each phase. Hydrophilic regions will interact with the aqueous phase (layer 1), while hydrophobic regions will orient toward the organic phase (layer 3).

Example Question #5 : Compound Purification

To isolate DNA from a cell pellet, a student is performing an extraction using phenol and chloroform. The cells were lysed with 0.5mL of lysis buffer. 0.5mL extraction solution, consisting of phenol:chloroform:isoamyl alcohol (25:24:1), was added to the lysate. The sample was centrifuged at high speed for five minutes. The liquid in the tube was separated into three phases after centrifugation (see diagram).

The student saves the layer containing nucleic acids and transfers it to a new tube. The student then adds ethanol and salt, and centrifuges the solution at high speed. Where is the DNA in this new solution after centrifugation?

Possible Answers:

Interphase

DNA cannot be isolated by adding ethanol

Pellet

Supernatant

Organic layer

Correct answer:

Pellet

Explanation:

After the first extraction, the DNA will be found in the aqueous phase due to its negative charge and hydrophilic nature. Transferring the aqueous phase (with DNA) and adding ethanol and salt will not result in an extraction; there will only be one phase after centrifugation: the aqueous phase. Following centrifugation, the DNA and salt precipitate from the aqueous ethanol solution and form a DNA pellet.

Example Question #1481 : Mcat Biological Sciences

Which of the following properties can be used to differentiate between enantiomers?

Possible Answers:

Melting temperature

Optical activity

Density

Heat of vaporization

Correct answer:

Optical activity

Explanation:

Chiral molecules are a unique type of isomer, defined as two molecules with inverted stereochemistry, which makes them mirror images of one another. These isomers will ahve the same molecular weight, as well as most physical properties. Enatiomers cannot be distinguished based on melting point, heat of vaporization, or density. The primary, defining characteristic of a chiral molecule is its ability to effect plane polarized light. One isomer will rotate the light to the right, while the other will rotate the light to the left.

Example Question #1 : Other Techniques

Which of the following properties cannot be used to differentiate between myoglobin and hemoglobin?

Possible Answers:

Location

Affinity for oxygen

Number of subunits

Bound reduced iron

Correct answer:

Bound reduced iron

Explanation:

Myoglobin and hemoglobin are the proteins primarily responsible for binding, transporting, and storing oxygen. Myoglobin is primarily located in muscle tissue, and has a very high affinity for oxygen. Hemoglobin is located in the blood, and has a slightly lower oxygen binding affinity. Thus, as hemoglobin carries oxygen past muscle tissue, oxygen can be released and will preferentially bind to myoglobin. Hemoglobin contains four subunits, each capable of binding one oxygen molecule, while myoglobin consists of only one subunit.

Both hemoglobin and myoglobin contain heme units, which structurally and functionally rely on the incorporation of reduced iron. As such, this property cannot be used to differentiate these two proteins.

Example Question #3 : Other Techniques

Which macromolecule is classified by physical properties rather than by monomer?

Possible Answers:

Carbohydrates

Nucleic acids

Lipids

Proteins

Correct answer:

Lipids

Explanation:

Unlike carbohydrates, proteins, and nucleic acids, lipids do not have a uniform monomer structure. Rather, they are classified by their hydrophobic properties and a variety of beasic structural categorizations. Some examples of lipid classifications are glycerophospholipids, sphingolipids, and steroids.

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