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Example Questions
Example Question #11 : Dna
DNA polymerase is the protein that adds new nucleotides to the elongating DNA strand during replication. In order for DNA polymerase to bind the template strand and add new nucleotides, a free 3' hydroxyl group must be exposed to accept the first nucleotide.
Which of the following is created to provide a free 3' hydroxyl group, enabling the initiation of DNA replication?
Single-strand binding protein
RNA primer
DNA primer
DNA polymerase II
Replication fork
RNA primer
RNA primer is the correct answer. A protein called RNA primase reads the existing DNA strand and adds a short sequence of RNA nucleotides. DNA polymerase then builds onto the 3' end of the RNA primer. After replication, the RNA primer is removed and replaced with DNA nucleotides.
Example Question #11 : Dna, Rna, And Proteins
DNA polymerase only functions in the 3'-to-5' direction. This means that it adds nucleotides to a free 3' hydroxyl group. DNA is replicated on both strands simultaneously. Since DNA is anti-parallel (the strands run in opposite directions), one new strand is being created continuously, while the other is being created in fragments.
What is the correct name of the fragments of the lagging strand?
Epstein fragments
Danzo-Shimura fragments
Miyazaki fragments
Okazaki fragments
Goldfeld fragments
Okazaki fragments
The correct name of the fragments is Okazaki fragments. The lagging strand aligns in the 5'-to-3' direction (away from the replication fork), but must be read in the 3'-to-5' direction (toward the replication fork) by DNA ploymerase. The result is non-continuous synthesis of the strand in small fragments, called Okazaki fragments. DNA ligase fuses these fragments together later in the replication process.
Example Question #13 : Dna Replication
Which enzyme of DNA replication unzips the DNA molecule?
Gyrase
Ligase
Primase
Helicase
Helicase
The enzyme helicase divides the two strands of the double helix; henceforth, single stranded binding (SSB) proteins stabilize the newly single strands, and prevent reannealing. The enzyme DNA gyrase ensures the double stranded areas beyond the replication bubbles do not supercoil, relieving the newly-added tension. Primase is a type of RNA polymerase that adds an RNA primer to the DNA to begin replication. DNA Polymerase III cannot begin replication without this primer. Ligase joins ends of Okazaki fragments that were produced on the lagging strand.
Example Question #11 : Dna Replication
During DNA replication, what purpose does the enzyme primase serve?
Add RNA primers to allow for replication
Unzip DNA to prepare it for replication
To join Okazaki fragments of the lagging strand
To join Okazaki fragments of the leading strand
Add RNA primers to allow for replication
The enzyme primase adds sequences of RNA to the DNA strand to begin replication. Primase is a type of RNA polymerase, and thus, it does not need a free 3' hydroxyl group as a substrate. The nucleotides it lays down act as a substrate for DNA polymerase. Okazaki fragments from the lagging strand are joined by ligase, and helicase is responsible for unzipping the DNA to prepare for replication.
Example Question #14 : Dna Replication
DNA replication is considered to be a __________ process.
semi-conservative
continuous
non-conservative
conservative
semi-conservative
During DNA replication, the parent strand is used as a template that the new strand uses to add the correct nucleotides (via complementary base pairing). The entire parent strand (template) is conserved, while the daughter strand is completely synthetic, meaning the nucleotides came from free nucleoside triphosphates (ATP, TTP, GTP, and CTP). Thus, DNA replication is said to be semi-conservative. The Meselson-Stahl experiment illustrated this principle through the use of different isotopes of nitrogen.
Example Question #15 : Dna Replication
A limitation of DNA polymerase III is that it cannot add new nucleotides without the direct action/product of which enzyme?
Ligase
Primase
Gyrase
Helicase
Primase
Primase, like all RNA polymerases, can lay down nucleotides with their only substrate being the template strand. Even though the nucleotides are RNA, not DNA, they still have the substrate that DNA polymerase needs in order to add nucleotides—a free 3' . Since the difference between deoxyribose and ribose occurs at the 2' position, DNA polymerase can use either RNA or DNA as a substrate. Helicase and gyrase help with formation and maintenance of the replication bubble, however they indirectly help DNA polymerase add new nucleotides.
Example Question #1 : Understanding Replication Processes
__________ binds the Okazaki fragments to the nucleotides that replace the RNA primers in the lagging strand.
Gyrase
DNA ligase
Helicase
Primase
DNA ligase
DNA ligase catalyzes the formation of bonds between the Okazaki fragments and the DNA that has replaced the RNA primers on the lagging strand.
Example Question #12 : Dna, Rna, And Proteins
Which DNA polymerase is responsible for exchanging RNA primers for DNA nucleotides during discontinuous replication?
DNA polymerase V
DNA polymerase I
DNA polymerase II
DNA polymerase III
DNA polymerase I
DNA polymerase I is the only polymerase that has 5' 3' exonuclease activity. This means that it can remove nucleotides in the 5' 3' direction. It also has 3' 5' exonuclease activity, as does DNA polymerase III; this is like a "backspace" for nucleotides that have just been added and need to be removed. DNA polymerase II's functions are largely unknown, DNA polymerase V plays a complex role in DNA repair, not replication.
Example Question #14 : Dna Replication
The formation of Okazaki fragments in eukaryotic DNA __________.
is required in the lagging strand only
is required in the leading strand only
is required in neither the leading or the lagging strands
is required in both the leading and the lagging strands
is required in the lagging strand only
Replication of DNA is both continuous and discontinuous, each form of replication occurring simultaneously. Continuous DNA synthesis occurs in the 3’ 5’ direction on the parent strand. This is often referred to as the leading strand with new nucleotides being added to the 3’ end. Discontinuous DNA synthesis occurs in the 5’ 3’ direction on the parent strand. This strand is often referred to as the lagging strand. It is completed in short sequences of nucleotides called Okazaki fragments. Replication on the lagging strand begins with the addition of an RNA primer by the enzyme primase. Primase adds the RNA primers ahead of the 5’ end of the lagging. This allows DNA polymerase III to add the Okazaki fragments to fill in the space between primers. This process repeats itself until the entire strand has been replicated. DNA polymerase I then comes to exchange the RNA primer with DNA nucleotides, then DNA ligase reinforces the bonding between the fragments and the DNA nucleotides that replaced the RNA primer. Note that in both leading and lagging strand synthesis, nucleotides are added to the 3' end of the growing chain, thus synthesis always occurs in the 5' 3' direction of the growing strand.
Example Question #14 : Dna, Rna, And Proteins
The leading strand is replicated __________, and the lagging strand is replicated __________.
continuously . . . discontinuously
continuously . . . continuously
discontinuously . . . continuously
discontinuously . . . discontinuously
continuously . . . discontinuously
Replication of DNA is both continuous and discontinuous, each form of replication occurring simultaneously. Continuous DNA synthesis occurs from the 3’ end to the 5’ end of the parent strand. This is often referred to as the leading strand with new nucleotides being added to the 3’ end. Discontinuous DNA synthesis occurs from the 5’ end to the 3’ end of the parent strand. This strand is often referred to as the lagging strand. It is completed in short sequences of nucleotides called Okazaki fragments. Replication on the lagging strand begins with the addition of an RNA primer by the enzyme primase. Primase adds the RNA primers ahead of the 5’ end of the lagging. This allows DNA polymerase III to add the Okazaki fragments to fill in the space between primers. This process repeats itself until the entire strand has been replicated. DNA polymerase I then comes to exchange the RNA primer with DNA nucleotides, then DNA ligase reinforces the bonding between the fragments and the DNA nucleotides that replaced the RNA primer. Once both the leading and lagging stranded have completed replication, the result is two identical strands of the original DNA molecule.
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