Biochemistry : Enzyme Kinetics and Inhibition

Study concepts, example questions & explanations for Biochemistry

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Example Questions

Example Question #1 : Michaelis Menten Equation

 

Which of the following is true about the Michaelis constant for any given enzyme?

Possible Answers:

It increases as the enzyme’s affinity for the substrate decreases

None of the other answers are true

It increases as the enzyme’s specificity for the substrate decreases

It is independent of the type of substrate

It is equal to 

Correct answer:

It increases as the enzyme’s affinity for the substrate decreases

Explanation:

The Michaelis constant, , is not equal to , but is rather the substrate concentration when the reaction rate is .  is an inverse measure of a substrate’s affinity for the enzyme. So as the affinity decreases,  increases. Enzyme specificity is measured by a different constant, , the specificity constant. Although  and specificity are in an inversely proportional relationship,  does not necessarily increase as specificity decreases; rather, , also known as the catalytic constant, could decrease proportionally for a given enzyme. The Michaelis constant, being a measure of affinity, is going to differ for different types of substrates, depending on their shape and other features that influence their ability to bind to an enzyme.

Example Question #1 : Michaelis Menten Equation

What is the ratio of  when  ?

Possible Answers:

Cannot be determined

Correct answer:

Explanation:

This question is answered using the Michaelis-Menten equation:

Rearrange the equation to find the ratio of interest.

Plug in  for  and simplify.

Example Question #2 : Michaelis Menten Equation

What does Michaelis-Menten model assume?

Possible Answers:

enzyme, substrate, and enzyme-substrate complex are in equilibrium

Enzyme-substrate complex decomposes to product only

The rate limiting step may not be present

No intermediate is formed

There are no enzyme catalyzed reactions

Correct answer:

enzyme, substrate, and enzyme-substrate complex are in equilibrium

Explanation:

In this model, an intermediate is formed when the substrate binds to an enzyme.  The intermediate decomposes to an enzyme and a product, not just the product alone. The model requires enzyme-catalyzed reactions that include a rate limiting step of the enzyme-substrate complex breaking down into the enzyme and product.

Example Question #1 : Michaelis Menten Equation

Given an enzyme with  of 0.5mM. at what substrate concentration will the velocity of the enzyme reach   of the 

Possible Answers:

Correct answer:

Explanation:

To solve this, we need the solve for  in the Michaelis-Menten equation:

We know the following information:

Plug in these numbers and solve for substrate concentration.

Example Question #1 : Michaelis Menten Equation

Suppose that an enzyme mixture contains an enzyme with a michaelis constant of . If the substrate concentration in this mixture is , what is the fractional saturation of this enzyme mixture?

Possible Answers:

Correct answer:

Explanation:

This question is asking us to determine the fractional saturation of a solution containing enzyme and substrate. Let's start by considering what we have, and what we are trying to solve for.

We know that the substrate concentration is  and we also know that this enzyme has a Michaelis constant of .

Also, let's consider what fractional saturation is. Fractional saturation refers to the proportion of enzyme molecules in a solution that are bound to substrate. This value can range from  (all enzymes are not bound to substrate) to  (all enzymes are bound to, or saturated with, substrate).

So, we are looking to calculate the number of enzyme-substrate complexes divided by the total amount of enzyme in solution, which we can express as . We can also relate these terms by the following equations.

Dividing these equation by each other, we obtain:

Furthermore, we can relate these terms by considering the Michaelis-Menten equation:

Or, written another way:

And combining everything we have done so far, we have:

And plugging in values, we can solve:

Example Question #3 : Michaelis Menten Equation

Which of the following is false about the Michaelis-Menten equation?

Possible Answers:

Velocity is proportional to enzyme concentration.

The maximum rate of reaction is reached as the substrate concentration increases indefinitely.

Velocity is proportional to substrate concentration.

Velocity is proportional to the turnover number.

Velocity is inversely proportional to enzyme concentration.

Correct answer:

Velocity is inversely proportional to enzyme concentration.

Explanation:

The Michaelis-Menten equation can be expressed as: 

 

The velocity is therefore proportional to the enzyme concentration , not inversely so.  is also referred to as the turnover number. As the substrate concentration  keeps increasing, then we end up with a steady state in which all the enzyme is bound. At this point, the maximum velocity, , has been reached.

Example Question #1 : Michaelis Menten Equation

An enzyme with a  value of  has a reaction rate of  at a substrate concentration of . What is the maximum reaction rate that this enzyme can achieve when it is saturated with substrate?

Possible Answers:

Correct answer:

Explanation:

For this question, we're provided with the michaelis constant for an enzyme, as well as the reaction rate for that enzyme at a particular substrate concentration. We're asked to determine the maximum possible reaction rate that this enzyme can achieve when it is saturated with substrate.

To solve this problem, we'll need to use the michaelis-menten equation, which is expressed as follows.

Then, we can rearrange the equation above in order to isolate the  term.

Now, we can plug in the values given to us in the question stem in order to solve for our answer.

Example Question #1 : Michaelis Menten Equation

Which of the following will increase the reaction rate of an enzymatic reaction?

I. Adding a competitive inhibitor

II. Increasing the substrate concentration

III. Decreasing the affinity of substrate to the enzyme

Possible Answers:

I and III

I only

II only

I and II

Correct answer:

II only

Explanation:

Reaction rate of an enzymatic reaction can be calculated using the Michaelis-Menten equation.

where  is the reaction rate, is the maximum reaction rate,  is the substrate concentration and  is the Michaelis constant.

Recall that adding a competitive inhibitor will increase the  but will not alter the . From the equation, we can see that increasing  will decrease the reaction rate; therefore, adding a competitive inhibitor will decrease reaction rate.

Substrate concentration is found in both the numerator and denominator of the equation; however, the substrate concentration is multiplied in the numerator whereas it is added in the denominator. This means that increasing substrate concentration will increase the numerator more than the denominator; therefore, increasing substrate concentration will increase reaction rate.

Affinity between enzyme and substrate is determined by . This constant is defined as the substrate concentration required to reach half the . Lowering  suggests that a lower substrate concentration is needed to reach the same half  (lower substrate concentration is needed because the affinity between enzyme and substrate increases and a more efficient reaction is carried out). This implies that lowering  increases the affinity between substrate and enzyme; therefore,  and affinity are inversely related. Decreasing the affinity will increase the  and, subsequently, decrease reaction rate.

Example Question #1 : Michaelis Menten Equation

What is the maximum reaction rate if adding  of substrate produces a reaction rate of ?

Possible Answers:

Cannot be determined from the given information

Correct answer:

Explanation:

The trick to this question is to notice that the  and the substrate concentration are the same. Recall that  is the substrate concentration required to reach half the maximum reaction rate. Since we are told that the substrate concentration and  are the same, we can conclude that that reaction rate of  is half the maximum reaction rate; therefore, the maximum reaction rate is .

Example Question #11 : Michaelis Menten Equation

Which of the following is a correct statement with regards to an enzyme-catalyzed reaction that obeys Michaelis-Menten kinetics?

Possible Answers:

The reaction is first-order with respect to substrate at low substrate concentrations, and zero-order with respect to substrate at higher substrate concentrations

The reaction is always zero-order with respect to substrate regardless of substrate concentration

The reaction is first-order with respect to substrate at high substrate concentrations, and zero-order with respect to substrate at lower substrate concentrations

The reaction is always first-order with respect to substrate regardless of substrate concentration

None of these

Correct answer:

The reaction is first-order with respect to substrate at low substrate concentrations, and zero-order with respect to substrate at higher substrate concentrations

Explanation:

To answer this question, it is essential to have an understanding of the Michaelis-Menten kinetics of enzymes.

When plotting a graph of initial reaction rate as a function of substrate concentration, the resulting plot shows a hyperbolic relationship. At first, the rate increases linearly with a fairly steep slope. But as substrate concentration rises, the graph begins to level off.

The question, however, is to determine the order of the reaction with respect to substrate (the effect substrate has on reaction rate). One helpful way to determine this is to make use of the Michaelis-Menten equation.

With this equation in mind, we can make predictions on how substrate concentration will affect the reaction order.

Low Substrate Concentrations:

When substrate concentration is very low, we can assume that . As a result of this, we can essentially say that . Thus, at low concentrations of , the equation can change as follows.

As we can see above, under conditions of low substrate concentration, the reaction is first-order with respect to enzyme and first-order with respect to substrate. This means that any slight change in the concentration of substrate will proportionately affect the reaction rate (for instance, if the substrate concentration increases by , then the reaction rate will also increase by , assuming that enzyme concentration is held constant).

*** As a side note, it's also worth noting that the above expression also includes a new reaction rate constant, one that is a ratio of two other constants, . This term is actually what is used to assess an enzyme's efficiency, since it states the reaction rate under conditions of very low substrate concentration.

High Substrate Concentrations:

Now, let's see what happens when substrate concentration is high. When this happens, we can say that . Just as we made an estimation before, we can do so once again by stating that  under such conditions. Next, we can take a look at how this changes the original equation.

As we can see, under high substrate concentrations (saturating conditions), the reaction is at its maximum value. Furthermore, notice that the  term cancels out of the expression. This means that, under saturating conditions, the reaction is zero-order with respect to substrate and first-order with respect to enzyme. The consequence of this is that a change in substrate concentration is unable to change the reaction rate; only a change in enzyme concentration (or temperature) can affect the rate at saturating substrate concentrations.

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