Adapted from "Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness" by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathematical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same overt characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are twenty percent more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species are all that is needed to determine relatedness. 

The differences produced by divergent evolution observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

The anatomical similarities between a horse's legs and a seal's flippers is best explained by which of the following?

Adapted from “In Mammoth Cave” by John Burroughs (1894)

Some idea of the impression which Mammoth Cave makes upon the senses, irrespective even of sight, may be had from the fact that blind people go there to see it, and are greatly struck with it. I was assured that this is a fact. The blind seem as much impressed by it as those who have their sight. When the guide pauses at a more interesting point, or lights the scene up with a great torch or with small flares, and points out the more striking features, the blind exclaim, "How wonderful! How beautiful!" They can feel it, if they cannot see it. They get some idea of the spaciousness when words are uttered. The voice goes forth in these colossal chambers like a bird. When no word is spoken, the silence is of a kind never experienced on the surface of the earth, it is so profound and abysmal. This, and the absolute darkness, to a sighted person makes him feel as if he were face to face with the primordial nothingness. The objective universe is gone; only the subjective remains; the sense of hearing is inverted, and reports only the murmurs from within. The blind miss much, but much remains to them. The great cave is not merely a spectacle to the eye; it is a wonder to the ear, a strangeness to the smell and to the touch. The body feels the presence of unusual conditions through every pore.

Which of the following answer choices is supported by the author’s statement that inside Mammoth Cave, “The objective universe is gone”?

Adapted from “Feathers of Sea Birds and Wild Fowl for Bedding” from The Utility of Birds by Edward Forbush (ed. 1922)

In the colder countries of the world, the feathers and down of waterfowl have been in great demand for centuries as filling for beds and pillows. Such feathers are perfect non-conductors of heat, and beds, pillows, or coverlets filled with them represent the acme of comfort and durability. The early settlers of New England saved for such purposes the feathers and down from the thousands of wild-fowl which they killed, but as the population increased in numbers, the quantity thus furnished was insufficient, and the people sought a larger supply in the vast colonies of ducks and geese along the Labrador coast. 

The manner in which the feathers and down were obtained, unlike the method practiced in Iceland, did not tend to conserve and protect the source of supply. In Iceland, the people have continued to receive for many years a considerable income by collecting eider down, but there they do not “kill the goose that lays the golden eggs.” Ducks line their nests with down plucked from their own breasts and that of the eider is particularly valuable for bedding. In Iceland, these birds are so carefully protected that they have become as tame and unsuspicious as domestic fowls In North America. Where they are constantly hunted they often conceal their nests in the midst of weeds or bushes, but in Iceland, they make their nests and deposit their eggs in holes dug for them in the sod. A supply of the ducks is maintained so that the people derive from them an annual income.

In North America, quite a different policy was pursued. The demand for feathers became so great in the New England colonies about the middle of the eighteenth century that vessels were fitted out there for the coast of Labrador for the express purpose of securing the feathers and down of wild fowl. Eider down having become valuable and these ducks being in the habit of congregating by thousands on barren islands of the Labrador coast, the birds became the victims of the ships’ crews. As the ducks molt all their primary feathers at once in July or August and are then quite incapable of flight and the young birds are unable to fly until well grown, the hunters were able to surround the helpless birds, drive them together, and kill them with clubs. Otis says that millions of wildfowl were thus destroyed and that in a few years their haunts were so broken up by this wholesale slaughter and their numbers were so diminished that feather voyages became unprofitable and were given up. 

This practice, followed by the almost continual egging, clubbing, shooting, etc. by Labrador fishermen, may have been a chief factor in the extinction of the Labrador duck, that species of supposed restricted breeding range. No doubt had the eider duck been restricted in its breeding range to the islands of Labrador, it also would have been exterminated long ago.

Which of the following best restates the meaning of the underlined phrase “as the population increased in numbers, the quantity thus furnished was insufficient”?

Adapted from “Humming-Birds: As Illustrating the Luxuriance of Tropical Nature” in Tropical Nature, and Other Essays by Alfred Russel Wallace (1878)

The food of hummingbirds has been a matter of much controversy. All the early writers down to Buffon believed that they lived solely on the nectar of flowers, but since that time, every close observer of their habits maintains that they feed largely, and in some cases wholly, on insects. Azara observed them on the La Plata in winter taking insects out of the webs of spiders at a time and place where there were no flowers. Bullock, in Mexico, declares that he saw them catch small butterflies, and that he found many kinds of insects in their stomachs. Waterton made a similar statement. Hundreds and perhaps thousands of specimens have since been dissected by collecting naturalists, and in almost every instance their stomachs have been found full of insects, sometimes, but not generally, mixed with a proportion of honey. Many of them in fact may be seen catching gnats and other small insects just like fly-catchers, sitting on a dead twig over water, darting off for a time in the air, and then returning to the twig. Others come out just at dusk, and remain on the wing, now stationary, now darting about with the greatest rapidity, imitating in a limited space the evolutions of the goatsuckers, and evidently for the same end and purpose. Mr. Gosse also remarks, ” All the hummingbirds have more or less the habit, when in flight, of pausing in the air and throwing the body and tail into rapid and odd contortions. This is most observable in the Polytmus, from the effect that such motions have on the long feathers of the tail. That the object of these quick turns is the capture of insects, I am sure, having watched one thus engaged pretty close to me.”

What can we infer from the author’s use of the underlined phrase, “sometimes, but not generally”?

Adapted from “Humming-Birds: As Illustrating the Luxuriance of Tropical Nature” in Tropical Nature, and Other Essays by Alfred Russel Wallace (1878)

The food of hummingbirds has been a matter of much controversy. All the early writers down to Buffon believed that they lived solely on the nectar of flowers, but since that time, every close observer of their habits maintains that they feed largely, and in some cases wholly, on insects. Azara observed them on the La Plata in winter taking insects out of the webs of spiders at a time and place where there were no flowers. Bullock, in Mexico, declares that he saw them catch small butterflies, and that he found many kinds of insects in their stomachs. Waterton made a similar statement. Hundreds and perhaps thousands of specimens have since been dissected by collecting naturalists, and in almost every instance their stomachs have been found full of insects, sometimes, but not generally, mixed with a proportion of honey. Many of them in fact may be seen catching gnats and other small insects just like fly-catchers, sitting on a dead twig over water, darting off for a time in the air, and then returning to the twig. Others come out just at dusk, and remain on the wing, now stationary, now darting about with the greatest rapidity, imitating in a limited space the evolutions of the goatsuckers, and evidently for the same end and purpose. Mr. Gosse also remarks, ” All the hummingbirds have more or less the habit, when in flight, of pausing in the air and throwing the body and tail into rapid and odd contortions. This is most observable in the Polytmus, from the effect that such motions have on the long feathers of the tail. That the object of these quick turns is the capture of insects, I am sure, having watched one thus engaged pretty close to me.”

The meaning of the underlined phrase “on the wing” is __________.

Adapted from “Birds in Retreat” in “Animal Defences—Active Defence” in Volume Four of The Natural History of Animals: The Animal Life of the World in Its Various Aspects and Relations by James Richard Ainsworth Davis (1903)

Among the large running birds are forms, like the African ostrich, in which the absence of powers of flight is largely compensated by the specialization of the legs for the purpose of rapid movement on the ground. For straightforward retreat in open country nothing could be more effective; but another kind of adaptation is required in birds like rails, which are deficient in powers of flight, and yet are able to run through thickly-growing vegetation with such rapidity as to commonly elude their enemies. This is rendered possible by the shape of their bodies, which are relatively narrow and flattened from side to side, so as to easily slip between the stems of grasses, rushes, and similar plants. Anyone who has pursued our native land-rail or corn-crake with intent to capture will have noted how extremely difficult it is even to get within sight of a bird of this sort. 

Certain birds, unfortunately for themselves, have lost the power of flight without correspondingly increased powers of running, and have paid the penalty of extinction. Such an arrangement, as might be anticipated, was the result of evolution in islands devoid of any predatory ground-animals, and a classic example of it is afforded by the dodo and its allies, birds related to the pigeons. The dodo itself was a large and clumsy-looking species that at one time abounded in the island of Mauritius, which, like oceanic islands generally, possessed no native mammals, while its indigenous reptiles were only represented by lizards. The ubiquitous sailor, however, and the animals (especially swine) which he introduced, brought about the extinction of this helpless bird in less than a century after its first discovery in 1598. Its memory is now only kept green by a few contemporary drawings and descriptions, certain museum remains, and the proverb "as extinct as a dodo.” A similar fate must overtake any organism suddenly exposed to new and unfavorable conditions, if devoid of sufficient plasticity to rapidly accommodate itself to the altered environment.

What does the author mean in using the underlined phrase “kept green”?

Adapted from Volume Four of The Natural History of Animals: The Animal Life of the World in Its Various Aspects and Relations by James Richard Ainsworth Davis (1903)

The examples of protective resemblance so far quoted are mostly permanent adaptations to one particular sort of surrounding. There are, however, numerous animals which possess the power of adjusting their color more or less rapidly so as to harmonize with a changing environment.

Some of the best known of these cases are found among those mammals and birds that inhabit countries more or less covered with snow during a part of the year. A good instance is afforded by the Irish or variable hare, which is chiefly found in Ireland and Scotland. In summer, this looks very much like an ordinary hare, though rather grayer in tint and smaller in size, but in winter it becomes white with the exception of the black tips to the ears. Investigations that have been made on the closely allied American hare seem to show that the phenomenon is due to the growth of new hairs of white hue. 

The common stoat is subject to similar color change in the northern parts of its range. In summer it is of a bright reddish brown color with the exception of the under parts, which are yellowish white, and the end of the tail, which is black. But in winter, the entire coat, save only the tip of the tail, becomes white, and in that condition the animal is known as an ermine. A similar example is afforded by the weasel. The seasonal change in the vegetarian Irish hare is purely of protective character, but in such an actively carnivorous creature as a stoat or weasel, it is aggressive as well, rendering the animal inconspicuous to its prey.

The phrase “harmonize with,” underlined in the first paragraph, most closely means __________.

Adapted from COMMON DISEASES OF FARM ANIMALS (1915) by R. A. Craig

The common bot-fly of the horse (G. equi) has a heavy, hairy body. Its color is brown, with dark and yellowish spots. The female fly can be seen during the warm weather, hovering around the horse, and darting toward the animal for the purpose of depositing the egg. The color of the egg is yellow, and it adheres firmly to the hair. It hatches in from two to four weeks, and the larva reaches the mouth through the animal licking the part. From the mouth, it passes to the stomach, where it attaches itself to the gastric mucous membrane. Here it remains until fully developed, when it becomes detached and is passed out with the faeces. The third stage is passed in the ground. This takes place in the spring and early summer and lasts for several weeks, when it finally emerges a mature fly.

The bot-fly of the ox (H. lineata) is dark in color and about the size of a honey-bee. On warm days, the female may be seen depositing eggs on the body of the animal, especially in the region of the heels. This seems to greatly annoy the animal, and it is not uncommon for cattle to become stampeded. The egg reaches the mouth through the animal licking the part. The saliva dissolves the shell of the egg and the larva is freed. It then migrates from the gullet, wanders about in the tissue until finally it may reach a point beneath the skin of the back. Here the larva matures and forms the well-known swelling or warble. In the spring of the year it works out through the skin. The next stage is spent in the ground. The pupa state lasts several weeks, when the mature fly issues forth.

The bot-fly of sheep (O. ovis) resembles an overgrown house-fly. Its general color is brown, and it is apparently lazy, flying about very little. This bot-fly makes its appearance when the warm weather begins, and deposits live larvae in the nostrils of sheep. This act is greatly feared by the animals, as shown by their crowding together and holding the head down. The larva works up the nasal cavities and reaches the sinuses of the head, where it becomes attached to the lining mucous membrane. In the spring, when fully developed, it passes out through the nasal cavities and nostrils, drops to the ground, buries itself, and in from four to six weeks develops into the mature fly.

SYMPTOMS OF BOT-FLY DISEASES.—The larvae of the bot-fly of the horse do not cause characteristic symptoms of disease. Work horses that are groomed daily are not hosts for a large number of "bots," but young and old horses that are kept in a pasture or lot and seldom groomed may become unthrifty and "pot bellied," or show symptoms of indigestion.

Cattle suffer much pain from the development of the larva of the H. lineata. During the spring of the year, the pain resulting from the presence of the larvae beneath the skin and the penetration of the skin is manifested by excitement and running about. Besides the loss in milk and beef production, there is a heavy yearly loss from the damage to hides.

The life of the bot-fly of sheep results in a severe catarrhal inflammation of the mucous membrane lining the sinuses of the head, and a discharge of a heavy, pus-like material from the nostrils. The irritation produced by the larvae may be so serious at times as to result in nervous symptoms and death.

It can reasonably be inferred from the passage that __________.

Adapted from The Evolutionist at Large by Grant Allen (1881)

I am engaged in watching a brigade of ants out on foraging duty, and intent on securing for the nest three whole segments of a deceased earthworm. They look for all the world like those busy companies one sees in the Egyptian wall paintings, dragging home a huge granite colossus by sheer force of bone and sinew. Every muscle in their tiny bodies is strained to the utmost as they pry themselves laboriously against the great boulders that strew the path, and that are known to our Brobdingnagian intelligence as grains of sand. Besides the workers themselves, a whole battalion of stragglers runs to and fro upon the broad line that leads to the headquarters of the community. The province of these stragglers, who seem so busy doing nothing, probably consists in keeping communications open, and encouraging the sturdy pullers by occasional relays of fresh workmen. I often wish that I could for a while get inside those tiny brains, and see, or rather smell, the world as ants do. For there can be little doubt that to these brave little carnivores here the universe is chiefly known as a collective bundle of odors, simultaneous or consecutive. As our world is mainly a world of visible objects, theirs, I believe, is mainly a world of olfactible things.

In the head of every one of these little creatures is something that we may fairly call a brain. Of course most insects have no real brains; the nerve-substance in their heads is a mere collection of ill-arranged ganglia, directly connected with their organs of sense. Whatever man may be, an earwig at least is a conscious, or rather a semi-conscious, automaton. He has just a few knots of nerve cells in his little pate, each of which leads straight from his dim eye or his vague ear or his indefinite organs of taste; and his muscles obey the promptings of external sensations without possibility of hesitation or consideration, as mechanically as the valve of a steam engine obeys the governor balls. The poor soul's intellect is wholly deficient, and the senses alone make up all that there is of him, subjectively considered. But it is not so with the highest insects. They have something that truly answers to the real brain of men, apes, and dogs, to the cerebral hemispheres and the cerebellum that are superadded in us mammals upon the simple sense-centers of lower creatures. Besides the eye, with its optic nerve and optic perceptive organs—besides the ear, with its similar mechanism—we mammalian lords of creation have a higher and more genuine brain, that collects and compares the information given to the senses, and sends down the appropriate messages to the muscles accordingly. Now, bees and flies and ants have got much the same sort of arrangement, on a smaller scale, within their tiny heads. On top of the little knots that do duty as nerve centers for their eyes and mouths, stand two stalked bits of nervous matter, whose duty is analogous to that of our own brains. And that is why these three sorts of insects think and reason so much more intellectually than beetles or butterflies, and why the larger part of them have organized their domestic arrangements on such an excellent cooperative plan.

We know well enough what forms the main material of thought with bees and flies, and that is visible objects. For you must think about something if you think at all; and you can hardly imagine a contemplative blow-fly setting itself down to reflect, like a Hindu devotee, on the syllable Om, or on the oneness of existence. Abstract ideas are not likely to play a large part in apian consciousness. A bee has a very perfect eye, and with this eye it can see not only form, but also color, as Sir John Lubbock's experiments have shown us. The information that it gets through its eye, coupled with other ideas derived from touch, smell, and taste, no doubt makes up the main thinkable and knowable universe as it reveals itself to the apian intelligence. To ourselves and to bees alike the world is, on the whole, a colored picture, with the notions of distance and solidity thrown in by touch and muscular effort; but sight undoubtedly plays the first part in forming our total conception of things generally.

It can reasonably be inferred from the passage that __________.

Adapted from Ice-Caves of France and Switzerland by George Forrest Browne (1865)

This account states that the cave is in the county of Thorn, among the lowest spurs of the Carpathians. The entrance, which faces the north, and is exposed to the cold winds from the snowy part of the Carpathian range, is eighteen fathoms high and nine broad; and the cave spreads out laterally, and descends to a point fifty fathoms below the entrance, where it is twenty-six fathoms in breadth, and of irregular height. Beyond this no one had at that time penetrated, on account of the unsafe footing, although many distant echoes were returned by the farther recesses of the cave; indeed, to get even so far as this, much step-cutting was necessary.

When the external frost of winter comes on, the account proceeds, the effect in the cave is the same as if fires had been lighted there: the ice melts, and swarms of flies and bats and hares take refuge in the interior from the severity of the winter. As soon as spring arrives, the warmth of winter disappears from the interior, water exudes from the roof and is converted into ice, while the more abundant supplies which pour down on to the sandy floor are speedily frozen there. In the dog-days, the frost is so intense that a small icicle becomes in one day a huge mass of ice; but a cool day promptly brings a thaw, and the cave is looked upon as a barometer, not merely feeling, but also presaging, the changes of weather. The people of the neighborhood, when employed in field-work, arrange their labour so that the mid-day meal may be taken near the cave, when they either ice the water they have brought with them, or drink the melted ice, which they consider very good for the stomach. It had been calculated that six hundred weekly carts would not be sufficient to keep the cavern free from ice. The ground above the cave is peculiarly rich in grass.

In explanation of these phenomena, Bell threw out the following suggestions, which need no comment. The earth being of itself cold and damp, the external heat of the atmosphere, by partially penetrating into the ground, drives in this native cold to the inner parts of the earth, and makes the cold there more dense. On the other hand, when the external air is cold, it draws forth towards the surface the heat there may be in the inner part of the earth, and thus makes caverns warm. In support and illustration of this view, he states that in the hotter parts of Hungary, when the people wish to cool their wine, they dig a hole two feet deep, and place in it the flagon of wine, and, after filling up the hole again, light a blazing fire upon the surface, which cools the wine as if the flagon had been laid in ice. He also suggests that possibly the cold winds from the Carpathians bring with them imperceptible particles of snow, which reach the water of the cave, and convert it into ice. Further, the rocks of the Carpathians abound in salts, nitre, alum, etc., which may, perhaps, mingle with such snowy particles, and produce the ordinary effect of the snow and salt in the artificial production of ice.

It can reasonably be inferred from the passage that __________.