Which of the following may be the pH inside a lysosome?

There are two models for the operation of the Golgi apparatus in eukaryotic cells. As it is difficult to visualize the operation of cells at the molecular level in real time, scientists typically rely on static electron micrographs to see the morphology of organelles. As a result, the dynamic operation of these organelles can sometimes be unclear.

Cisternal Maturation Hypothesis

In the cisternal maturation hypothesis, the cisternae of the Golgi apparatus evolve. Proteins leave the endoplasmic reticulum, and enter the cis-Golgi. The cisterna of the cis-Golgi then matures, with its enzymatic contents and internal environment changing as it becomes the medial-Golgi, and, eventually, the trans-Golgi.

In this model, the proteins never physically leave their membrane-bound cisternae during their transit across the Golgi. Instead, the entire unit of contents remains within the evolving cisternae.

Vesicular Transport Hypothesis

In contrast to the cisternal maturation hypothesis, the vesicular transport hypothesis posits that the cis-, medial-, and trans-Golgi cisternae are more static structures. Instead of evolving around their contents, the contents are physically shuttled via vesicular intermediates from each cisterna to the next.

In the case of vesicular transport, vesicles are shuttled along microtubules. Motor proteins facilitate this movement, with unique proteins being used for each direction of movement along a microtubule.

Microtubules are closely associated not only with vesicular transport, but also with cilia and flagella physiology. Which statement is true regarding cilia and flagella?

I. Most ciliated cells have many cilia structures

II. Most flagellated cells have only one flagellum

III. Only flagella have a 9+2 microtubule arrangement

IV. Both cilia and flagella move via the action of dynein

There are two models for the operation of the Golgi apparatus in eukaryotic cells. As it is difficult to visualize the operation of cells at the molecular level in real time, scientists typically rely on static electron micrographs to see the morphology of organelles. As a result, the dynamic operation of these organelles can sometimes be unclear.

Cisternal Maturation Hypothesis

In the cisternal maturation hypothesis, the cisternae of the Golgi apparatus evolve. Proteins leave the endoplasmic reticulum, and enter the cis-Golgi. The cisterna of the cis-Golgi then matures, with its enzymatic contents and internal environment changing as it becomes the medial-Golgi, and, eventually, the trans-Golgi.

In this model, the proteins never physically leave their membrane-bound cisternae during their transit across the Golgi. Instead, the entire unit of contents remains within the evolving cisternae.

Vesicular Transport Hypothesis

In contrast to the cisternal maturation hypothesis, the vesicular transport hypothesis posits that the cis-, medial-, and trans-Golgi cisternae are more static structures. Instead of evolving around their contents, the contents are physically shuttled via vesicular intermediates from each cisterna to the next.

In the case of vesicular transport, vesicles are shuttled along microtubules. Motor proteins facilitate this movement, with unique proteins being used for each direction of movement along a microtubule.

In the Golgi apparatus, mannose-6-phosphate is often added to proteins to mark them for delivery to lysosomes. Which membrane-bound structure fuses with lysosomes following uptake of large and small extra-cellular particles, respectively?

During which of the following portions of the cell cycle is DNA polymerase most active?

During which of the following portions of the cell cycle are mRNA and proteins mainly produced?

Human chromosomes are divided into two arms, a long q arm and a short p arm.  A karyotype is the organization of a human cell’s total genetic complement.  A typical karyotype is generated by ordering chromosome 1 to chromosome 23 in order of decreasing size. 

When viewing a karyotype, it can often become apparent that changes in chromosome number, arrangement, or structure are present.  Among the most common genetic changes are Robertsonian translocations, involving transposition of chromosomal material between long arms of certain chromosomes to form one derivative chromosome.  Chromosomes 14 and 21, for example, often undergo a Robertsonian translocation, as below.

A karyotype of this individual for chromosomes 14 and 21 would thus appear as follows:

Though an individual with aberrations such as a Robertsonian translocation may be phenotypically normal, they can generate gametes through meiosis that have atypical organizations of chromosomes, resulting in recurrent fetal abnormalities or miscarriages.

Chromosomes are often made visible using Giemsa staining. This stain shows specific banding patterns for chromosomes, and helps scientists organize them under a microscope. Considering that chromosomes are the standard unit of organization for a cell’s DNA, during which phase of the cell cycle would chromosomes most likely be visible?

Scientists use a process called Flourescent In-Situ Hybridization, or FISH, to study genetic disorders in humans. FISH is a technique that uses spectrographic analysis to determine the presence or absence, as well as the relative abundance, of genetic material in human cells. 

To use FISH, scientists apply fluorescently-labeled bits of DNA of a known color, called probes, to samples of test DNA. These probes anneal to the sample DNA, and scientists can read the colors that result using laboratory equipment. One common use of FISH is to determine the presence of extra DNA in conditions of aneuploidy, a state in which a human cell has an abnormal number of chromosomes. Chromosomes are collections of DNA, the totality of which makes up a cell’s genome. Another typical use is in the study of cancer cells, where scientists use FISH labels to ascertain if genes have moved inappropriately in a cell’s genome.

Using red fluorescent tags, scientists label probe DNA for a gene known to be expressed more heavily in cancer cells than normal cells. They then label a probe for an immediately adjacent DNA sequence with a green fluorescent tag. Both probes are then added to three dishes, shown below.  In dish 1 human bladder cells are incubated with the probes, in dish 2 human epithelial cells are incubated, and in dish 3 known non-cancerous cells are used. The relative luminescence observed in regions of interest in all dishes is shown below.

If the bladder cells are experiencing uncontrolled division in dish 1, they are likely spending abnormally long periods of time in which phase of the cell cycle?

There are several methods for analyzing the number of cells undergoing proliferation. Cells or whole organisms can be treated with BrdU, a uracil analog, which is incorporated during DNA synthesis. Cells or tissues can be fixed and BrdU can be detected using BrdU-specific antibodies. Similarly, cells can be fixed without any pretreatment, and proliferation can be detected by antibodies specific for MKI67 or pH3 (phosphorylated histone 3). MKI67 can be detected at all active phases of the cell cycle (not interphase) while pH3 can be detected during mitosis only.

Which detection method should be used to detect the greatest number of healthy cells?

In 2013, scientists linked a cellular response called the unfolded protein response (UPR) to a series of neurodegenerative diseases, including such major health issues as Parkinson’s and Alzheimer’s Disease. According to their work, the unfolded protein response is a reduction in translation as a result of a series of enzymes that modify a translation initiation factor, eIF2, as below:

In the above sequence, the unfolded protein sensor binds to unfolded protein, such as the pathogenic amyloid-beta found in the brains of Alzheimer’s Disease patients. This sensor then phosphorylates PERK, or protein kinase RNA-like endoplasmic reticulum kinase. This leads to downstream effects on eIF2, inhibition of which represses translation. It is thought that symptoms of neurodegenerative disease may be a result of this reduced translation.

Which of the following times in the cell cycle is the activity of eIF2 likely to be highest?

During the eukaryotic cell cycle, what is the purpose of the G2/M checkpoint?