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Example Questions
Example Question #1 : Understanding Active Sites
Which of the following inhibitors will block the active site of a protein?
Competitive inhibitor
Non-competitive inhibitor
Allosteric inhibitor
All of these will block the active site of a protein
Uncompetive inhibitor
Competitive inhibitor
Proteins can be inhibited in numerous ways by different types of inhibitors. Competitive inhibitors will compete with substrate for the active site to block the protein from performing its function. If there is enough substrate and very little competitive inhibitor, proteins will perform their functions almost as if there were no competitive inhibitors.
In contrast, allosteric inhibitors bind to regions of the protein away from the active site, but change the shape of the active site such that substrate cannot bind. Since there is no direct competition, increasing substrate concentration cannot overcome allosteric inhibition. Non-competitive inhibition is a type of allosteric inhibition. Uncompetitive inhibition occurs when the inhibitor will only bind to the enzyme-substrate complex, locking the substrate in place and preventing other substrates from binding.
Example Question #1 : Understanding Active Sites
The active site of a protein works in a way similar to __________.
a lock and key
a motor in a car
a hole in a wall
a gate in a fence
the shuffle button on an MP3 player
a lock and key
The active site on a protein is the area where a substrate can attach. This relationship is most often described using a metaphor of a lock and a key because each protein has an active site specific to one substrate much like a lock can only be opened by one key.
Example Question #2 : Understanding Active Sites
__________ modification of an enzyme permits an effector molecule to bind the enzyme at a site other than the active site. This can modulate the enzyme's activity to make it either more or less active.
Inhibitory
Allosteric
Antagonist
Agonist
Cofactor
Allosteric
The key here is to know that if something binds the enzyme at a location other than the active site, the type of modification is defined as allosteric. The other words more generally describe things that can bind to receptors, enzymes, etc., but the best and most specific answer is "allosteric."
Example Question #33 : Proteins
Which of the following best describes why an enzyme loses its catalytic capabilities when exposed to extremely high temperatures?
Covalent modifications made to the enzyme are disrupted by high temperatures and the enzyme cannot bind its substrate
The bonds maintaining the shape of the enzyme are broken, and the active site loses its conformation and can no longer bind its proper substrate
The activation energy of the reaction becomes so great that the enzyme cannot overcome the energy, and therefore cannot catalyze reactions
All of these statements describe mechanisms by which heat destroys the catalytic activity of an enzyme
All substrates are degraded at high temperatures, and therefore there is no reaction to catalyze
The bonds maintaining the shape of the enzyme are broken, and the active site loses its conformation and can no longer bind its proper substrate
It is important to know that when exposed to high temperatures, all proteins become denatured, and lose their native shape/conformation.
This has nothing to do with the activation energy of the reaction (eliminating that answer). While some substrates may be degraded at high temperatures, the word "all" renders this answer incorrect, nor does this describe what happens to the enzyme. Covalent modificatinos can change enzymatic function, but do not have anything to do with higher temperature.
The correct answer is that the enzyme itself is denatured, thus changing the shape and the way the active site is shaped, resulting in an inability to efficiently bind its substrate. The structure of the enzyme is dictated by intermolecular forces, which are susceptible to interference from temperature changes (unlike covalent bonds).
Example Question #3 : Understanding Active Sites
Which mode of enzyme inhibition involves an inhibitor molecule binding the active site of the enzyme?
Mixed inhibition
Competitive inhibition
Non-competitive inhibition
Irreversible inhibition
Uncompetitive inhibition
Competitive inhibition
Competitive inhibition is the only type of inhibition in which the inhibitor molecule directly binds the active site of the enzyme, thereby 'competing' with the actual substrate for location on the enzyme. The other choices involve binding elsewhere on the enzyme (non-competitive) or binding the enzyme-substrate complex but not an isolated enzyme (mixed), but none of them describe binding the active site except for competitive.
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