GRE Subject Test: Biochemistry, Cell, and Molecular Biology : DNA

Study concepts, example questions & explanations for GRE Subject Test: Biochemistry, Cell, and Molecular Biology

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All GRE Subject Test: Biochemistry, Cell, and Molecular Biology Resources

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Example Questions

Example Question #31 : Dna

Which of the following would be affected by inhibiting a cell's ability to perform reverse transcription?

Possible Answers:

None of these answers; cells do not regularly use reverse transcription

mRNA splicing

Lengthening of telomeres

Post-translational modifications

Correct answer:

Lengthening of telomeres

Explanation:

The only choice that involves a process that uses reverse transcription is the lengthening of telomeres. Telomerase is an enzyme that uses reverse transcription to extend telomeres after replication. mRNA splicing and post-translational modifications do not directly use the process of reverse transcription. 

Example Question #4 : Help With Chromosome Structure And Function

You have discovered a new species of fish with a diploid number of 116. The gametes of this organism, just like human gametes, are haploid. You also discover that each gamete has 2 sex chromosomes, and sex of the zygote is determined by various combinations of the 4 possible sex chromosomes. What is the number of autosomes in a gamete of this new species?

Possible Answers:

Cannot be determined from the information given

Correct answer:

Explanation:

If the diploid number is 116,  haploid number in the gamete. Subtract 2 sex chromosomes, gives 56 autosomes in the gamete. This required knowing the distinction between autosomes and sex chromosomes and remembering to work from the haploid number since we are asked how many autosomes are in a gamete, not in an adult.

Example Question #2 : Help With Chromosome Structure And Function

Which of the following are not true about homologous pairs of chromosomes? 

Possible Answers:

The alleles on each chromosome in the pair are the same

The pair is made up of one maternal chromosome and one paternal chromosome

The failure of homologous chromosomes to separate during meiosis is called non-disjunction

Genetic loci on homologous chromosomes are in roughly the same order

Recombination occurs between homologous chromosomes to generate new gene combinations

Correct answer:

The alleles on each chromosome in the pair are the same

Explanation:

The alleles on the chromosome are not the same. The gene loci is the same, but which allele a chromosome carries depends on the donor. For example, if the maternal parent had blue eyes and the paternal parent had green eyes, then at the gene for eye color there could be 2 different alleles in their progeny.

Example Question #3 : Help With Chromosome Structure And Function

During interphase, the genome is packed into chromatin, a complex of DNA and protein that orders the DNA. Most of the chromatin is loosely packed but certain regions a highly condensed. What is this condensed chromatin called?

Possible Answers:

Euchromatin

Heterochromatin

Homochromatin

Alphachromatin

Betachromatin

Correct answer:

Heterochromatin

Explanation:

During interphase, DNA is complexed with protein into a structure called chromatin. Euchromatin refers to chromatin that is loosely packed. Heterochromatin refers to chromatin that is highly condensed, and largely unavailable for transcription.

Example Question #1 : Help With Epigenetics

Which of the following is an example of epigenetic inheritance?

Possible Answers:

Coding regions of genes

Mismatch mutations

Purine dimers

Histone methylation patterns

Correct answer:

Histone methylation patterns

Explanation:

Epigenetic inheritance is a term that describes heritable changes in gene expression that are not caused by DNA sequence. Purine dimers, mismatched bases, and the coding regions of genes are all describe information that is contained within the DNA sequence. Histone methylation patterns, however, are not contained within the DNA. This heritable information has various effects on gene expression that is not due to the sequence of DNA, thus making it an example of epigenetic inheritance. Expression patterns based on histone methylation affect the accessibility of a DNA sequence and the ability of RNA polymerase to bind the sequence for transcription, silencing a gene without actually altering it.

Example Question #2 : Help With Epigenetics

Commonly, _________ of histones leads to the silencing of genes.

Possible Answers:

acetylation

phosphorylation

All of these would silence the gene

methylation

Correct answer:

methylation

Explanation:

Out of the choices, only methylation of histones is commonly associated with the silencing of genes. Proteins known as histone methyltransferases bind a methyl group to amino acids in the histone, most commonly lysine or arginine. The result is a change in chromatin structure, most commonly blocking transcription sites and preventing expression.

Acetylation of histones is often found in activated genes. Phosphorylation of histones has been seen in DNA regulation, but it is unclear whether or not this modification affects the expression of genes.

Example Question #3 : Help With Epigenetics

Physical barriers between euchromatin and heterochromatin that often block enhancers from interacting with promoters, subsequently preventing transciption, are best characterized as  which of the following?

Possible Answers:

Insulators

Nuclear lamins

Mediators

None of the other answers

Chromosomal looping

Correct answer:

Insulators

Explanation:

The correct answer is insulators. Insulators are regions of DNA that serve as boundary elements, preventing the formation of euchromatin from heterochromatin. Mediators and chromosomal looping promote transcription factor recruitment to the DNA and promoter-enhancer interactions. Nuclear lamins provide structure to the nuclear envelope.

Example Question #4 : Help With Epigenetics

One mechanism by which the cell can stably alter gene transcription is through DNA _________, which will repress expression of the gene that is altered. This is an example of an epigenetic modification. 

Possible Answers:

lipidation

acetylation

phosphorylation

carboxylation

methylation

Correct answer:

methylation

Explanation:

Methylation is one of the most common epigenetic modifications that can be made to DNA sequences, and it typically results in repression of transcription at that site. This is typically achieved by modifying activity of the promoter region of a given gene. 

Example Question #516 : Gre Subject Test: Biochemistry, Cell, And Molecular Biology

Which of the following best describes the mechanism by which histone acetylation results in increased transcription of a given chromosomal segment?

Possible Answers:

Acetylation reduces the interaction between the histones and the DNA strand; this relaxed conformation permits increased interaction with transcriptional machinery. 

Acetylation increases phosphorylation at crucial enhancer sites on the DNA sequence, thereby increasing transcription at those loci. 

Acetylation removes methyl groups from the DNA sequence, thus relieving the repression that they induce on transcription. 

Acetylation increases the interaction between the histones and the DNA strand; this conformation permits increased activation of polymerases. 

Acetylation activates transcription factors near the histone; this permits increased transcriptional activity at a given locus. 

Correct answer:

Acetylation reduces the interaction between the histones and the DNA strand; this relaxed conformation permits increased interaction with transcriptional machinery. 

Explanation:

Acetylation induces a change directly to the histone; the histone is typically positively charged and thus has a high level of interaction with the negatively charged DNA. Acetylation makes the histone less positive, and therefore it is less attracted to the DNA. This reduced interaction reduces the tight coiling of DNA around the histones, and transcriptional machinery has more access to the strand to increase transcription of genes at those sites. 

Example Question #1 : Help With Epigenetics

Histones are proteins that bind to and order the DNA into tight clusters, making it inaccessible to transcription machinery. How does the cells loosen the interaction of the histone and DNA.

Possible Answers:

By adding acetyl groups to the histone

By adding acetyl groups to the DNA

By methylating the DNA

By removing acyl groups from the histone

By adding methyl groups to the histone

Correct answer:

By adding acetyl groups to the histone

Explanation:

By adding acetyl groups to the positively charged histone tails, the cell can loosen the binding of DNA to a histone since DNA is largely negatively charged. This DNA can now be accessed by transcription machinery such as RNA polymerase. In this way acetylation of histones promotes transcription of genes on that piece of DNA. Deacetylation does the opposite - replaces positive charges onto histones so that they can interact more tightly with the DNA, ultimately suppressing expression of the DNA. 

All GRE Subject Test: Biochemistry, Cell, and Molecular Biology Resources

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