Biochemistry : Second Messengers

Study concepts, example questions & explanations for Biochemistry

varsity tutors app store varsity tutors android store

Example Questions

Example Question #41 : Signal Transduction Pathways

Which of the following molecules is not considered to be a second messenger?

Possible Answers:

All of these are second messengers

Inositol 1,4,5 triphosphate (IP3)

cAMP

Diacylglycerol (DAG)

Calcium ion

Correct answer:

All of these are second messengers

Explanation:

Second messengers are molecules that act within cells to either increase or decrease activity or amount of a final molecule. All of the answer choices are second messengers in various pathways.

Example Question #42 : Signal Transduction Pathways

What is one of the main purposes of second messenger molecules?

Possible Answers:

They allow receptors to be receptive to multiple types of ligands

They allow a single signal to cause endless, unceasing production of some final product

They allow ligands to bind to multiple types of receptors

They allow for signifiant amplification of a signal within a cell

They allow for the production of only one kind of molecule

Correct answer:

They allow for signifiant amplification of a signal within a cell

Explanation:

When a ligand binds to its associated receptor, the signal is passed into the cell and on to a distinct final molecule (often DNA transcription factors). Second messengers allow for significant amplification of a single ligand/receptor signal in order to cause mass change within a cell, and therefore within the body.

Example Question #43 : Signal Transduction Pathways

What is the function of the enzyme adenylate cyclase often seen in signal transduction pathways?

Possible Answers:

Conversion of GTP to GDP

Conversion of GDP to GTP 

Conversion of ATP to cAMP

Conversion of ATP to ADP

Conversion of cAMP to ATP

Correct answer:

Conversion of ATP to cAMP

Explanation:

Often following the activation of a G protein, ATP is converted to the second messenger, cAMP, by adenylate cyclase. This propagates the amplification of the signal transduction.

Example Question #44 : Signal Transduction Pathways

How does cAMP exert its effects within a cell?

Possible Answers:

cAMP closes chloride channels, causing a change in the cellular membrane potential

cAMP is hydrolyzed to ATP, which phosphorylates target molecules

cAMP acts directly upon DNA to cause alterations in gene expression

cAMP acts directly on transcription factors, which then go on to cause alterations in gene expression

cAMP activates protein kinase A, which then acts upon other target molecules

Correct answer:

cAMP activates protein kinase A, which then acts upon other target molecules

Explanation:

After adenylate cyclase converts ATP to cAMP, this second messenger goes on to bind to protein kinase A. Unactivated protein kinase A requires cAMP in order to become activated, at which point it can phosphorylate certain threonine and serine residues on target molecules.

Example Question #41 : Biochemical Signaling

How does protein kinase A become activated?

Possible Answers:

cAMP dissociates from the catalytic subunits which allows them to be active

cAMP binds to its regulatory subunits and to its catalytic subunits causing dissociation of the now activated catalytic subunits

cAMP binds only to its regulatory subunits causing dissociation of its catalytic subunits

cAMP dissociates from the regulatory subunits which allows the catalytic subunits to be active

cAMP binds only to its catalytic subunits causing their dissociation from the regulatory subunits

Correct answer:

cAMP binds only to its regulatory subunits causing dissociation of its catalytic subunits

Explanation:

In order for protein kinase A to become activated, cAMP must bind to it. PKA has a structure composed of two regulatory subunits and two catalytic subunits all bound together. The catalytic units are active on their own, so in order to work they must simply become dissociated from the regulatory subunits. Thus, cAMP will bind to only the regulatory subunits of PKA which then allows dissociation of the already catalytic subunits.

Example Question #42 : Biochemical Signaling

What is the function of phospholipase C?

Possible Answers:

Forms diacylglycerol (DAG) from inositol triphosphate (IP3) and phosphatidylinositol biphosphate (PIP2)

Converts inositol triphosphate (IP3) into phosphatidylinositol biphosphate (PIP2) and diacylglycerol (DAG)

Forms phosphatidylinositol biphosphate (PIP2) from diacylglycerol (DAG) and inositol triphosphate (IP3)

Converts diacylglycerol (DAG) into phosphatidylinositol biphosphate (PIP2) and inositol triphosphate (IP3)

Converts phosphatidylinositol biphosphate (PIP2) into diacylglycerol (DAG) and inositol triphosphate (IP3)

Correct answer:

Converts phosphatidylinositol biphosphate (PIP2) into diacylglycerol (DAG) and inositol triphosphate (IP3)

Explanation:

The function of phospholipase C is to cleave phosphatidylinositol biphosphate (PIP2) into the two second messenger molecules, diacylglycerol (DAG) and inositol triphosphate (IP3). These can then act within signal transduction pathways to amplify ligand/receptor signals.

Example Question #47 : Signal Transduction Pathways

Atrial natriuretic factor and nitric oxide use which molecule as a second messenger to exert their effects?

Possible Answers:

Calcium

DAG (diacylglycerol)

cAMP (cyclic adenosine monophosphate)

IP3 (inositol triphosphate)

cGMP (cyclic guanosine monophosphate)

Correct answer:

cGMP (cyclic guanosine monophosphate)

Explanation:

Atrial natriuretic factor (ANF) and nitric oxide use cGMP as a second messenger to exert their effects. The ANF has guanylyl cyclase activity which converts GTP (guanosine-5'-triphosphate) to cGMP (cyclic guanosine monophosphate). This in turn activates protein kinase G and leads to relaxation of smooth muscle. IP3, calcium and DAG are second messengers in activation pathways of G protein-coupled receptors, as is the case of the epinephrine receptor.

Example Question #51 : Signal Transduction Pathways

How do diacylglycerol (DAG) and IP3 (inositol triphosphate) act as second messengers?

I. Phospholipase catalyses the formation of DAG and IP3 from PIP2 (phosphatidylinositol-4,5-bisphosphate)

II. IP3 increases intracellular calcium ion levels

III. DAG stimulates protein kinase C

IV. Protein kinase C activates protein kinases known as the MAP kinases

Possible Answers:

II and III

I, II, III, and IV

II, III, and IV

III and IV

I and II

Correct answer:

I, II, III, and IV

Explanation:

Phospholipase C catalyses the formation of DAG (diacylglycerol) and IP3 (inositol triphosphate) from PIP2 (phosphatidylinositol-4,5-bisphosphate). IP3 promotes the influx of calcium ions into the cytoplasm while DAG stimulates protein kinase C.

Example Question #52 : Signal Transduction Pathways

How does nitric oxide act as a second messenger?

I. Nitric oxide activates guanylate cyclase.

II. Nitric oxide promotes formation of the intracellular messenger cyclic guanosine monophosphate (cGMP).

III. An increase of cGMP due to nitric oxide causes vasodilation.

IV. Nitric oxide promotes formation of cyclic adenosine monophosphate (cAMP) 

Possible Answers:

I and IV

I, II, and III

II and III

II, III, and IV

I and II

Correct answer:

I, II, and III

Explanation:

Nitric oxide is a gas second messenger.It is also a neurotransmitter in the brain. Nitric oxide is produced by 3 enzymes: endothelial, induced, and neuronal nitric oxide synthases. Nitric oxide synthases require a calcium ions for the enzyme activity. Nitric oxide does act thru the cyclic guanosine monophosphate activation pathway.

Example Question #20 : Second Messengers

Which of the following is not associated with signal transduction pathways?

Possible Answers:

Activation of protein kinase A

Breakdown of phosphatidylinositol bisphosphate

Synthesis of beta-hydroxybutyrate

Activation of phosphodiesterases

Dissociation of G protein subunits

Correct answer:

Synthesis of beta-hydroxybutyrate

Explanation:

In this question, we're asked to identify a statement that is not connected with intracellular signal transduction pathways (STP). To do so, we'll need to look at each answer choice individually.

Upon binding of a ligand to a G protein-coupled receptor (GPCR), the conformational change of this receptor is transmitted to a G-protein that is on the inner leaflet of the plasma membrane. This causes the individual sub-units of the G-protein to dissociate from each other, which then goes on to activate other components of the signal transduction pathway.

Activation of GPCR can also result in a signal transduction pathway in which a particular intracellular enzyme is activated. This enzyme is responsible for cleaving a specific fatty acid off of certain phospholipids from the plasma membrane. The fatty acid cleaved off is called phosphatidylinositol bisphosphate, which acts as a second messenger in STP's.

Another consequence of the activation of certain GPCR's is the activation of an enzyme called protein kinase A (PKA). This enzyme then goes on to phosphorylate other kinase enzymes. The end result is amplification of the entire signal.

One of the common second messengers in STP's is cyclic AMP (cAMP) and cyclic GMP (cGMP). One of the mechanisms in place to turn STP's off is to degrade these cyclic nucleotides. The class of enzymes responsible for this is called phosphodiesterases.

Beta-hydroxybutyrate is a ketone body that forms when excess acetyl-CoA is present. This molecule is not involved in signal transduction pathways.

Learning Tools by Varsity Tutors