Biochemistry : Macromolecule Structures and Functions

Study concepts, example questions & explanations for Biochemistry

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Example Questions

Example Question #1 : Modifications And Epigenetics

Which statement concerning DNA methylation in mammals is false?

Possible Answers:

CpG sites are mutation hot spots

Deamination of methylated cytosine gives thymine

None of the other answers is false

Deamination of unmethylated cytosine gives uracil

DNA methyltransferase adds a methyl group to cytosines of the dinucleotide CpG

Correct answer:

None of the other answers is false

Explanation:

Unmethylated cytosine spontaneously deaminates to uracil. Over time, methylated cytosine is spontaneously deaminated to thymine. Random deamination of methylcytosines causes mutation, creating hot spots. The vast majority of DNA methylations in mammals occurs at CpG (cytosine-phospate-guanine) sites.

 

 

Example Question #2 : Modifications And Epigenetics

Which of the following describes a mutation in which a segment of DNA detaches from a chromosome and reattaches to another chromosome?

Possible Answers:

Point mutation

Translocation

Deletion

Null mutation

Inversion

Correct answer:

Translocation

Explanation:

A null mutation is one that deactivates a gene entirely. Point mutations are those that occur within a single, small site in a gene. Inversion involves the reversal of orientation of a DNA segment. Deletion occurs when a whole part of a chromosome is removed, joining two ends that were far apart. Translocation involves the exchange of genetic material from two chromosomes that are not homologous.

Example Question #3 : Modifications And Epigenetics

Generally, silencing of a gene is accomplished by __________?

Possible Answers:

Acetylation 

Decarboxylation

Ligation

Phosphorylation

Methylation 

Correct answer:

Methylation 

Explanation:

The silencing of a gene is most often accomplished via methylation of the DNA. The methyl groups are added to the gene's promoter region and thus, the DNA is not read by transcriptional enzymes.

Example Question #4 : Modifications And Epigenetics

How does methylation cause the silencing of a gene?

Possible Answers:

Methyl groups are added to the coding sequence in the DNA

Methyl groups are removed from the coding sequence in the DNA

Methyl groups are transferred from the coding sequence of the DNA to the promoter region

Methyl groups are removed from the promoter region of the DNA

Methyl groups are added to the promoter region of the DNA

Correct answer:

Methyl groups are added to the promoter region of the DNA

Explanation:

In order to silence a gene by methylation, methyl groups are added to the promoter region of DNA. This area is upstream of the coding sequence and is responsible for initiation of transcription. Thus, methylating the promoter region inhibits further transcription of the gene.

Example Question #153 : Biochemistry

Which of the following DNA bases can be methylated in the promoter region to silence a gene?

Possible Answers:

Thymine

Guanine and thymine

Cytosine and adenine

Cytosine

Guanine and adenine

Correct answer:

Cytosine and adenine

Explanation:

The only two bases that can be methylated are cytosine and adenine.

Example Question #5 : Modifications And Epigenetics

Formation of thymine dimers in DNA can lead to conditions such as melanoma when unrepaired. This DNA mutation is primarily caused by __________.

Possible Answers:

alkylating agents such as nitrogen mustard

UV irradiation

defects in DNA topoisomerase

Correct answer:

UV irradiation

Explanation:

Alkylating agents and  can also cause cancer, but they lead to methylation and mismatch mutations rather than the formation of pyrimidine dimers.

Example Question #46 : Nucleic Acid Structures And Functions

Which of the following statements about restriction enzymes is true?

Possible Answers:

None of these answers is true

Restriction enzymes can only cut bacterial DNA

Reverse transcriptase is a DNA polymerase which creates new strands from 3’ to 5’

Restriction enzymes are endonucleases which recognize a restriction site and cut DNA within or around this site

Restriction enzymes act at RNA mutation sites, to create a covalent bond which links two adjacent exons after an intron sequence is excised

Correct answer:

Restriction enzymes are endonucleases which recognize a restriction site and cut DNA within or around this site

Explanation:

Reverse transcriptase synthesizes DNA in the 5' to 3' direction, using RNA as a template (hence it is the reverse of transcription). Restriction enzymes act only on DNA, not RNA, and they can cut bacterial as well as viral DNA—indeed, they can provide protection against viruses—and are found in archaea. Restriction enzymes can recognize specific sequences of nucleotides at restriction sites and cut DNA at these sites. Restriction enzymes do not create covalent bonds between adjacent exons after intron excision, rather this is done by tRNA splicing ligase. 

Example Question #161 : Biochemistry

What is the role of xanthine oxidase?

I. The enzyme xanthine oxidase converts hypoxanthine to xanthine and, also, xanthine to uric acid.

II. Xanthine oxidase is involved in purine (nucleotides like adenine, guanine) degradation.

III. In diseases where there is a high production of purines, the enzyme's products (uric acid) can cause gout.

IV. Gout medication is designed to target xanthine oxidase.

Possible Answers:

I and IV

I and II

I, II, III, and IV

I, II, and III

II, III, and IV

Correct answer:

I, II, III, and IV

Explanation:

Xanthine oxidase is an enzyme important in purine catabolism. Nucleotides from DNA degradation are metabolized to uric acid by xanthine oxidase.In diseases with high levels of nucleotide production, uric acid levels are also high and produce symptoms of gout (uric acid is deposited abnormally in tissues). Gout is treated with inhibitors of xanthine oxidase such as allopurinol, reducing the levels of uric acid and the symptoms of gout.

Example Question #1 : Fatty Acids

Which of the following statements about oleic acid is false?

Possible Answers:

There are 16 carbon atoms in its longest chain

None of the other answers is false

Its condensed molecular formula is 

It is a fatty acid with an omega-9 unsaturation

Its IUPAC name is (9Z)-Octadec-9-enoic acid

Correct answer:

There are 16 carbon atoms in its longest chain

Explanation:

Oleic acid (which composes much of olive oil) has a double bond between its 9th and 10th atoms. Hence it has an omega-9 unsaturation. It has 18 carbon atoms, not 16, which gives it a condensed molecular formula:. Because it is a cis-isomer, the IUPAC name contains a Z, and becuse it is an unsaturated carboxylic acid, it ends in -enoic acid.

Example Question #148 : Macromolecule Structures And Functions

Which of the following factors contribute to increasing the melting point of a fatty acid?

Possible Answers:

Increased number of double bonds

Decrease fatty acid chain length

Introducing cis-double bonds

Increased fatty acid chain length

Adding methylene groups

Correct answer:

Increased fatty acid chain length

Explanation:

Double bonds cause unsaturation, thus decreases the melting point. Cis-double bonds as well as methylation also introduce kinks within the chain, decreasing the melting point. Increasing the fatty acid chain length creates saturation, thus causes the melting point to increase. Therefore, decreasing fatty acid chain length has the adverse effect.

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