Biochemistry : Biochemistry

Study concepts, example questions & explanations for Biochemistry

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Example Questions

Example Question #31 : Biochemical Signaling

Which of the following hormone/target-tissue combinations is not activated by cyclic AMP?

Possible Answers:

Luteinizing hormone/heart

Vasopressin/kidney

Thyroid-stimulating hormone/thyroid

Glucagon/liver

Adrenaline/muscle

Correct answer:

Luteinizing hormone/heart

Explanation:

All of the hormones, and tissues, listed, have responses which can be mediated by cyclic AMP. Luteinizing hormone, however, does not target the heart. Rather, it targets organs of the reproductive system.

Example Question #2 : Second Messengers

Which of the following is not a second messenger?

Possible Answers:

Calcium

G-protein

diacylglycerol

cAMP

cGMP

Correct answer:

G-protein

Explanation:

There are many types of second messengers including diacylglycerol, cAMP, cGMP, calcium, and inositol trisphosphate.  However, a G-protein is part of a pathway that utilizes second messengers, but is not one itself.

Example Question #1051 : Biochemistry

How does cAMP regulate the action of Protein kinase A (PKA)?

Possible Answers:

Four molecules of cAMP bind only to the catalytic subunits of PKA which allows them to function

Four molecules of cAMP bind to PKA and dissociate it into 2 catalytic subunits and 2 regulatory subunits

cAMP phosphorylates PKA which sets it into action.

cAMP is initially bound to PKA to prevent its action, and when it dissociates PKA is able to function

cAMP does not affect the action of PKA

Correct answer:

Four molecules of cAMP bind to PKA and dissociate it into 2 catalytic subunits and 2 regulatory subunits

Explanation:

The binding of four cAMP molecules to PKA dissociates it into two regulatory subunits and two catalytic subunits.  The actual sites that the cAMP binds to, however, are allosteric sites - they are not directly on the regulatory sites or the catalytic sites.

Example Question #1052 : Biochemistry

cAMP is one of the most fundamentally important 2nd degree messengers in the cell, released by a variety of receptors.

In a phosphorylation system, what is the direct purpose of cyclic AMP, what does protein does this secondary messenger activate?

Possible Answers:

Phosphorylase kinase B

Protein kinase A

Glycogen phosphorylase

Glycogen synthase

Phosphoprotein phosphatase inhibitor

Correct answer:

Protein kinase A

Explanation:

A phosphorylation cascade, involves many different steps and complicated interactions between kinases, phosphorylases, and phosphatases. In this case, the enzymes mentioned relate to the phosphorylation and dephosphorylation cascade involved with glycogen synthesis and degradation.

When a beta-adrenergic receptor or glucagon receptor is activated, two types of G-protein couple receptors, a G-protein is phosphorylated and disassociates GTP to act upon the enzyme, Adenylate cyclase, to synthesize cylic AMP (cAMP) from ATP.

This first step following the release of cAMP is that it acts upon protein kinase A by attaching to its two R subunits (requiring 4 cAMP) while releasing two C subunits. The C subunits function as other chemical messengers in the cell, acting upon multiple different enzymes to ultimately increase the rate of glycogen degradation and decrease the rate of glycogen synthesis.

Example Question #41 : Signal Transduction Pathways

Which of the following molecules is not considered to be a second messenger?

Possible Answers:

All of these are second messengers

Inositol 1,4,5 triphosphate (IP3)

cAMP

Diacylglycerol (DAG)

Calcium ion

Correct answer:

All of these are second messengers

Explanation:

Second messengers are molecules that act within cells to either increase or decrease activity or amount of a final molecule. All of the answer choices are second messengers in various pathways.

Example Question #42 : Signal Transduction Pathways

What is one of the main purposes of second messenger molecules?

Possible Answers:

They allow receptors to be receptive to multiple types of ligands

They allow a single signal to cause endless, unceasing production of some final product

They allow ligands to bind to multiple types of receptors

They allow for signifiant amplification of a signal within a cell

They allow for the production of only one kind of molecule

Correct answer:

They allow for signifiant amplification of a signal within a cell

Explanation:

When a ligand binds to its associated receptor, the signal is passed into the cell and on to a distinct final molecule (often DNA transcription factors). Second messengers allow for significant amplification of a single ligand/receptor signal in order to cause mass change within a cell, and therefore within the body.

Example Question #43 : Signal Transduction Pathways

What is the function of the enzyme adenylate cyclase often seen in signal transduction pathways?

Possible Answers:

Conversion of GTP to GDP

Conversion of GDP to GTP 

Conversion of ATP to cAMP

Conversion of ATP to ADP

Conversion of cAMP to ATP

Correct answer:

Conversion of ATP to cAMP

Explanation:

Often following the activation of a G protein, ATP is converted to the second messenger, cAMP, by adenylate cyclase. This propagates the amplification of the signal transduction.

Example Question #44 : Signal Transduction Pathways

How does cAMP exert its effects within a cell?

Possible Answers:

cAMP closes chloride channels, causing a change in the cellular membrane potential

cAMP is hydrolyzed to ATP, which phosphorylates target molecules

cAMP acts directly upon DNA to cause alterations in gene expression

cAMP acts directly on transcription factors, which then go on to cause alterations in gene expression

cAMP activates protein kinase A, which then acts upon other target molecules

Correct answer:

cAMP activates protein kinase A, which then acts upon other target molecules

Explanation:

After adenylate cyclase converts ATP to cAMP, this second messenger goes on to bind to protein kinase A. Unactivated protein kinase A requires cAMP in order to become activated, at which point it can phosphorylate certain threonine and serine residues on target molecules.

Example Question #1053 : Biochemistry

How does protein kinase A become activated?

Possible Answers:

cAMP binds only to its regulatory subunits causing dissociation of its catalytic subunits

cAMP dissociates from the catalytic subunits which allows them to be active

cAMP dissociates from the regulatory subunits which allows the catalytic subunits to be active

cAMP binds to its regulatory subunits and to its catalytic subunits causing dissociation of the now activated catalytic subunits

cAMP binds only to its catalytic subunits causing their dissociation from the regulatory subunits

Correct answer:

cAMP binds only to its regulatory subunits causing dissociation of its catalytic subunits

Explanation:

In order for protein kinase A to become activated, cAMP must bind to it. PKA has a structure composed of two regulatory subunits and two catalytic subunits all bound together. The catalytic units are active on their own, so in order to work they must simply become dissociated from the regulatory subunits. Thus, cAMP will bind to only the regulatory subunits of PKA which then allows dissociation of the already catalytic subunits.

Example Question #1054 : Biochemistry

What is the function of phospholipase C?

Possible Answers:

Converts inositol triphosphate (IP3) into phosphatidylinositol biphosphate (PIP2) and diacylglycerol (DAG)

Converts phosphatidylinositol biphosphate (PIP2) into diacylglycerol (DAG) and inositol triphosphate (IP3)

Forms phosphatidylinositol biphosphate (PIP2) from diacylglycerol (DAG) and inositol triphosphate (IP3)

Converts diacylglycerol (DAG) into phosphatidylinositol biphosphate (PIP2) and inositol triphosphate (IP3)

Forms diacylglycerol (DAG) from inositol triphosphate (IP3) and phosphatidylinositol biphosphate (PIP2)

Correct answer:

Converts phosphatidylinositol biphosphate (PIP2) into diacylglycerol (DAG) and inositol triphosphate (IP3)

Explanation:

The function of phospholipase C is to cleave phosphatidylinositol biphosphate (PIP2) into the two second messenger molecules, diacylglycerol (DAG) and inositol triphosphate (IP3). These can then act within signal transduction pathways to amplify ligand/receptor signals.

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