Transpiration concerns the process through which water is carried through plants from roots to small pores in leaves, where it evaporates into the atmosphere. Thus transpiration is not a part of the carbon cycle, which concerns the biochemical exchange of carbon. 

The Atmosphere is largely the source of Carbon in the Carbon cycle. Plants utilize photosynthesis to convert atmospheric Carbon Dioxide into Glucose. Animals consume this Glucose and store it in their bodies until they die. the Ocean hosts a large amount of dissolved Carbon Dioxide gas and has Calcium Carbonate as a storage place in oceanic organisms like coral. 

All of these are biogeochemical cycles:

Carbon cycle - plants and animals consume carbon dioxide and release carbon dioxide during decomposition or respiration, then the carbon dioxide returns to the atmosphere.

Phosphorus cycle - similar to the carbon cycle, plants and animals consume phosphorous and release it during decomposition. Then the phosphorous returns to the ground and waterways by way of bacteria and processes such as mineralization. 

Nitrogen cycle - this is the most complicated biogeochemical cycles. This is because it takes place in multiple situations, including: nitrogen fixation, nitrification, denitrification, and ammonification.

Hydraulic cycle - the water cycle. Water evaporates, wind moves air (and water), precipitation occurs.

Although all of the above are part of the nitrogen cycle, the major reservoir for nitrogen is the atmosphere. The atmosphere contains nitrogen gas which cannot be extracted by plants or animals from the atmosphere. From its reservoir in the atmosphere, nitrogen gas is combined with oxygen to  form nitrate and carried to Earth dissolved in rain. Nitrogen-fixing bacteria produce ammonia. This is absorbed by plants and other producers and incorporated into biological molecules that are passed through the trophic levels. Nitrate and ammonia are released by excretion or by decomposer bacteria. Other bacteria convert these molecules back to atmoshperic nitrogen, completing the cycle.

A source is an organism or physical body that releases a certain compound or element. Through energy dynamics or physical manipulations of the environment, it reaches the sink. The sink is the receiver of the element and can act as another source for a different organisms or physical body. This is how matter travels in the environment, from pairs of source to sink dynamics. 

According to the principles of the Nitrogen cycle, plants can only absorb nitrogen in the form of ammonia. This is achieved by nitrogen-fixing bacteria that convert atmospheric nitrogen into a form usable by plants. Plants excrete nitrogen in the form of waste as nitrates which are absorbed by animals. 

The phosphorus cycle does not contain an atmospheric phase, while both the sulfur and nitrogen cycles do.

The reservoir of phosphorus in ecosystems is rock, where it is bound to oxygen in the form of phosphate. As phosphate-rich rocks are exposed and eroded, rainwater dissolves the phosphate. Dissolved phosphate is abosrbed through the roots of plants. Animals eat the plants and after they die decomposers return the phosphorus that remains in the dead bodies back to the soil and water. It may then be reincorporated into rock. 

All of the other cycles have at least one atmospheric component in their systems. The carbon cycle incorporates carbon dioxide in the photosynthesis portion of its cycle. The sulfur cycle incorporates gaseous sulfur dioxide when it is released by volcanic eruptions. The water cycle has the condensation of clouds in the atmosphere and the precipitation of those clouds as well. The nitrogen cycle incorporates atmospheric nitrogen gas before it is fixed by cyanobacteria. Only the phosphorus cycle does not have a phosphorus containing compound in the atmosphere that is essential for life on Earth. 

The water cycle remains in the form of water throughout the cycle. The major reservoir of water is the ocean. The water cycle is driven by solar energy which evaporates water, and by gravity, which draws water back to Earth in the form of precipitation from water vapor in the atmosphere.