Adapted from Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathmatical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same existential characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are 20% more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species is all that is needed to determine relatedness. 

Divergent evolution that produces the differences observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

Phylogenetics traditionally investigates which molecular structures?

Adapted from Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathmatical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same existential characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are 20% more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species is all that is needed to determine relatedness. 

Divergent evolution that produces the differences observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

What mathematical tool is used in phylogenetics to study species interrelatedness?

Adapted from A Practical Treatise on the Hive and Honey-Bee by Lorenzo Lorraine Langstroth (1857 ed.)

Of all the numerous enemies of the honey-bee, the Bee-Moth (Tinea mellonella), in climates of hot summers, is by far the most to be dreaded. So widespread and fatal have been its ravages in this country that thousands have abandoned the cultivation of bees in despair, and in districts which once produced abundant supplies of the purest honey, bee-keeping has gradually dwindled down into a very insignificant pursuit. Contrivances almost without number have been devised to defend the bees against this invidious foe, but still it continues its desolating inroads, almost unchecked, laughing as it were to scorn at all the so-called "moth-proof" hives, and turning many of the ingenious fixtures designed to entrap or exclude it into actual aids and comforts in its nefarious designs.

I should feel but little confidence in being able to reinstate bee-keeping in our country into a certain and profitable pursuit if I could not show the apiarian in what way he can safely bid defiance to the pestiferous assaults of this, his most implacable enemy. I have patiently studied its habits for years, and I am at length able to announce a system of management founded upon the peculiar construction of my hives, which will enable the careful bee-keeper to protect his colonies against the monster. The bee-moth infects our apiaries, just as weeds take possession of a fertile soil. Before explaining the means upon which I rely to circumvent the moth, I will first give a brief description of its habits.

Swammerdam, towards the close of the seventeenth century, gave a very accurate description of this insect, which was then called by the very expressive name of the "bee-wolf." He has furnished good drawings of it, in all its changes, from the worm to the perfect moth, together with the peculiar webs or galleries that it constructs and from which the name of Tinea galleria or “gallery moth” has been given to it by some entomologists. He failed, however, to discriminate between the male and female, which, because they differ so much in size and appearance, he supposed to be two different species of the wax-moth. It seems to have been a great pest in his time, and even Virgil speaks of the "dirum tineæ genus," the dreadful offspring of the moth; that is the worm.

This destroyer usually makes its appearance about the hives in April or May, the time of its coming depending upon the warmth of the climate or the forwardness of the season. It is seldom seen on the wing (unless startled from its lurking place about the hive) until towards dark, and is evidently chiefly nocturnal in its habits. In dark cloudy days, however, I have noticed it on the wing long before sunset, and if several such days follow in succession, the female, oppressed with the urgent necessity of laying her eggs, may be seen endeavoring to gain admission to the hives. The female is much larger than the male, and "her color is deeper and more inclining to a darkish gray, with small spots or blackish streaks on the interior edge of her upper wings." The color of the male inclines more to a light gray; they might easily be mistaken for different species of moths. These insects are surprisingly agile, both on foot and on the wing. The motions of a bee are very slow in comparison. "They are," says Reaumur, "the most nimble-footed creatures that I know." "If the approach to the apiary be observed of a moonlight evening, the moths will be found flying or running round the hives, watching an opportunity to enter, whilst the bees that have to guard the entrances against their intrusion will be seen acting as vigilant sentinels, performing continual rounds near this important post, extending their antenna to the utmost, and moving them to the right and left alternately. Woe to the unfortunate moth that comes within their reach!" "It is curious," says Huber, "to observe how artfully the moth knows how to profit, to the disadvantage of the bees, which require much light for seeing objects; and the precautions taken by the latter in reconnoitering and expelling so dangerous an enemy."

The first paragraph establishes all of the following EXCEPT __________.

Adapted from A Practical Treatise on the Hive and Honey-Bee by Lorenzo Lorraine Langstroth (1857 ed.)

Of all the numerous enemies of the honey-bee, the Bee-Moth (Tinea mellonella), in climates of hot summers, is by far the most to be dreaded. So widespread and fatal have been its ravages in this country that thousands have abandoned the cultivation of bees in despair, and in districts which once produced abundant supplies of the purest honey, bee-keeping has gradually dwindled down into a very insignificant pursuit. Contrivances almost without number have been devised to defend the bees against this invidious foe, but still it continues its desolating inroads, almost unchecked, laughing as it were to scorn at all the so-called "moth-proof" hives, and turning many of the ingenious fixtures designed to entrap or exclude it into actual aids and comforts in its nefarious designs.

I should feel but little confidence in being able to reinstate bee-keeping in our country into a certain and profitable pursuit if I could not show the apiarian in what way he can safely bid defiance to the pestiferous assaults of this, his most implacable enemy. I have patiently studied its habits for years, and I am at length able to announce a system of management founded upon the peculiar construction of my hives, which will enable the careful bee-keeper to protect his colonies against the monster. The bee-moth infects our apiaries, just as weeds take possession of a fertile soil. Before explaining the means upon which I rely to circumvent the moth, I will first give a brief description of its habits.

Swammerdam, towards the close of the seventeenth century, gave a very accurate description of this insect, which was then called by the very expressive name of the "bee-wolf." He has furnished good drawings of it, in all its changes, from the worm to the perfect moth, together with the peculiar webs or galleries that it constructs and from which the name of Tinea galleria or “gallery moth” has been given to it by some entomologists. He failed, however, to discriminate between the male and female, which, because they differ so much in size and appearance, he supposed to be two different species of the wax-moth. It seems to have been a great pest in his time, and even Virgil speaks of the "dirum tineæ genus," the dreadful offspring of the moth; that is the worm.

This destroyer usually makes its appearance about the hives in April or May, the time of its coming depending upon the warmth of the climate or the forwardness of the season. It is seldom seen on the wing (unless startled from its lurking place about the hive) until towards dark, and is evidently chiefly nocturnal in its habits. In dark cloudy days, however, I have noticed it on the wing long before sunset, and if several such days follow in succession, the female, oppressed with the urgent necessity of laying her eggs, may be seen endeavoring to gain admission to the hives. The female is much larger than the male, and "her color is deeper and more inclining to a darkish gray, with small spots or blackish streaks on the interior edge of her upper wings." The color of the male inclines more to a light gray; they might easily be mistaken for different species of moths. These insects are surprisingly agile, both on foot and on the wing. The motions of a bee are very slow in comparison. "They are," says Reaumur, "the most nimble-footed creatures that I know." "If the approach to the apiary be observed of a moonlight evening, the moths will be found flying or running round the hives, watching an opportunity to enter, whilst the bees that have to guard the entrances against their intrusion will be seen acting as vigilant sentinels, performing continual rounds near this important post, extending their antenna to the utmost, and moving them to the right and left alternately. Woe to the unfortunate moth that comes within their reach!" "It is curious," says Huber, "to observe how artfully the moth knows how to profit, to the disadvantage of the bees, which require much light for seeing objects; and the precautions taken by the latter in reconnoitering and expelling so dangerous an enemy."

Which of the following statements about bees is supported by the passage?

Adapted from A Practical Treatise on the Hive and Honey-Bee by Lorenzo Lorraine Langstroth (1857 ed.)

Of all the numerous enemies of the honey-bee, the Bee-Moth (Tinea mellonella), in climates of hot summers, is by far the most to be dreaded. So widespread and fatal have been its ravages in this country that thousands have abandoned the cultivation of bees in despair, and in districts which once produced abundant supplies of the purest honey, bee-keeping has gradually dwindled down into a very insignificant pursuit. Contrivances almost without number have been devised to defend the bees against this invidious foe, but still it continues its desolating inroads, almost unchecked, laughing as it were to scorn at all the so-called "moth-proof" hives, and turning many of the ingenious fixtures designed to entrap or exclude it into actual aids and comforts in its nefarious designs.

I should feel but little confidence in being able to reinstate bee-keeping in our country into a certain and profitable pursuit if I could not show the apiarian in what way he can safely bid defiance to the pestiferous assaults of this, his most implacable enemy. I have patiently studied its habits for years, and I am at length able to announce a system of management founded upon the peculiar construction of my hives, which will enable the careful bee-keeper to protect his colonies against the monster. The bee-moth infects our apiaries, just as weeds take possession of a fertile soil. Before explaining the means upon which I rely to circumvent the moth, I will first give a brief description of its habits.

Swammerdam, towards the close of the seventeenth century, gave a very accurate description of this insect, which was then called by the very expressive name of the "bee-wolf." He has furnished good drawings of it, in all its changes, from the worm to the perfect moth, together with the peculiar webs or galleries that it constructs and from which the name of Tinea galleria or “gallery moth” has been given to it by some entomologists. He failed, however, to discriminate between the male and female, which, because they differ so much in size and appearance, he supposed to be two different species of the wax-moth. It seems to have been a great pest in his time, and even Virgil speaks of the "dirum tineæ genus," the dreadful offspring of the moth; that is the worm.

This destroyer usually makes its appearance about the hives in April or May, the time of its coming depending upon the warmth of the climate or the forwardness of the season. It is seldom seen on the wing (unless startled from its lurking place about the hive) until towards dark, and is evidently chiefly nocturnal in its habits. In dark cloudy days, however, I have noticed it on the wing long before sunset, and if several such days follow in succession, the female, oppressed with the urgent necessity of laying her eggs, may be seen endeavoring to gain admission to the hives. The female is much larger than the male, and "her color is deeper and more inclining to a darkish gray, with small spots or blackish streaks on the interior edge of her upper wings." The color of the male inclines more to a light gray; they might easily be mistaken for different species of moths. These insects are surprisingly agile, both on foot and on the wing. The motions of a bee are very slow in comparison. "They are," says Reaumur, "the most nimble-footed creatures that I know." "If the approach to the apiary be observed of a moonlight evening, the moths will be found flying or running round the hives, watching an opportunity to enter, whilst the bees that have to guard the entrances against their intrusion will be seen acting as vigilant sentinels, performing continual rounds near this important post, extending their antenna to the utmost, and moving them to the right and left alternately. Woe to the unfortunate moth that comes within their reach!" "It is curious," says Huber, "to observe how artfully the moth knows how to profit, to the disadvantage of the bees, which require much light for seeing objects; and the precautions taken by the latter in reconnoitering and expelling so dangerous an enemy."

One of the main points made in the last section of the last paragraph is __________.

Adapted from "Recent Views as to Direct Action of Light on the Colors of Flowers and Fruits" in Tropical Nature, and Other Essays by Alfred Russel Wallace (1878)

The theory that the brilliant colors of flowers and fruits is due to the direct action of light has been supported by a recent writer by examples taken from the arctic instead of from the tropical flora. In the arctic regions, vegetation is excessively rapid during the short summer, and this is held to be due to the continuous action of light throughout the long summer days. "The further we advance towards the north, the more the leaves of plants increase in size as if to absorb a greater proportion of the solar rays. M. Grisebach says that during a journey in Norway he observed that the majority of deciduous trees had already, at the 60th degree of latitude, larger leaves than in Germany, while M. Ch. Martins has made a similar observation as regards the leguminous plants cultivated in Lapland.” The same writer goes on to say that all the seeds of cultivated plants acquire a deeper color the further north they are grown, white haricots becoming brown or black, and white wheat becoming brown, while the green color of all vegetation becomes more intense. The flowers also are similarly changed: those which are white or yellow in central Europe becoming red or orange in Norway. This is what occurs in the Alpine flora, and the cause is said to be the same in both—the greater intensity of the sunlight. In the one the light is more persistent, in the other more intense because it traverses a less thickness of atmosphere.

Admitting the facts as above stated to be in themselves correct, they do not by any means establish the theory founded on them; and it is curious that Grisebach, who has been quoted by this writer for the fact of the increased size of the foliage, gives a totally different explanation of the more vivid colors of Arctic flowers. He says, “We see flowers become larger and more richly colored in proportion as, by the increasing length of winter, insects become rarer, and their cooperation in the act of fecundation is exposed to more uncertain chances.” (Vegetation du Globe, col. i. p. 61—French translation.) This is the theory here adopted to explain the colors of Alpine plants, and we believe there are many facts that will show it to be the preferable one. The statement that the white and yellow flowers of temperate Europe become red or golden in the Arctic regions must we think be incorrect. By roughly tabulating the colors of the plants given by Sir Joseph Hooker as permanently Arctic, we find among fifty species with more or less conspicuous flowers, twenty-five white, twelve yellow, eight purple or blue, three lilac, and two red or pink; showing a very similar proportion of white and yellow flowers to what obtains further south.

The “recent writer” quoted in the first paragraph believes that __________.

Adapted from "Recent Views as to Direct Action of Light on the Colors of Flowers and Fruits" in Tropical Nature, and Other Essays by Alfred Russel Wallace (1878)

The theory that the brilliant colors of flowers and fruits is due to the direct action of light has been supported by a recent writer by examples taken from the arctic instead of from the tropical flora. In the arctic regions, vegetation is excessively rapid during the short summer, and this is held to be due to the continuous action of light throughout the long summer days. "The further we advance towards the north, the more the leaves of plants increase in size as if to absorb a greater proportion of the solar rays. M. Grisebach says that during a journey in Norway he observed that the majority of deciduous trees had already, at the 60th degree of latitude, larger leaves than in Germany, while M. Ch. Martins has made a similar observation as regards the leguminous plants cultivated in Lapland.” The same writer goes on to say that all the seeds of cultivated plants acquire a deeper color the further north they are grown, white haricots becoming brown or black, and white wheat becoming brown, while the green color of all vegetation becomes more intense. The flowers also are similarly changed: those which are white or yellow in central Europe becoming red or orange in Norway. This is what occurs in the Alpine flora, and the cause is said to be the same in both—the greater intensity of the sunlight. In the one the light is more persistent, in the other more intense because it traverses a less thickness of atmosphere.

Admitting the facts as above stated to be in themselves correct, they do not by any means establish the theory founded on them; and it is curious that Grisebach, who has been quoted by this writer for the fact of the increased size of the foliage, gives a totally different explanation of the more vivid colors of Arctic flowers. He says, “We see flowers become larger and more richly colored in proportion as, by the increasing length of winter, insects become rarer, and their cooperation in the act of fecundation is exposed to more uncertain chances.” (Vegetation du Globe, col. i. p. 61—French translation.) This is the theory here adopted to explain the colors of Alpine plants, and we believe there are many facts that will show it to be the preferable one. The statement that the white and yellow flowers of temperate Europe become red or golden in the Arctic regions must we think be incorrect. By roughly tabulating the colors of the plants given by Sir Joseph Hooker as permanently Arctic, we find among fifty species with more or less conspicuous flowers, twenty-five white, twelve yellow, eight purple or blue, three lilac, and two red or pink; showing a very similar proportion of white and yellow flowers to what obtains further south.

According to the "recent writer" quoted in the first paragraph, what are the two factors that affect light intensity?

"Cacti" by Ami Dave (2013)

Cacti are plants suited to the desert, and we must always keep this factor in mind when growing ornamental cacti in our gardens, for it helps us provide cacti with conditions that allow them to survive and thrive. For example, a cactus should never be watered over its body, as it will start to rot. This is because it is covered with a waxy coating which prevents water loss through evaporation. When one waters the cactus over its body, the waxy coating is washed away and the plant begins to rot. The amount of water that one must supply to the cactus is very much dependent upon the season and upon the climate of the place. During the summer season one should water cacti every four days, whereas in the rainy season, once every fifteen days is quite enough.

Cacti need a minimum of two and a half hours of sunlight per day; however, they should not be kept in the sun all day because they may wrinkle when exposed to too much bright sunlight. Unlike other plants, cacti produce carbon dioxide during the day and oxygen during the night, so they are ideal plants to be kept in bedrooms to freshen up the air at night.

If a cactus is to thrive and prosper, the size of the pot in which it is grown needs to be monitored carefully. The pot should always be a little smaller than the plant itself because it is only when the plant has to struggle to survive that it will thrive. If the pot is too spacious and the plant does not need to struggle, chances are that the cactus will die. Similarly, if a cactus shows no signs of growth, stop watering it. Watering should be resumed only when the plant begins to grow again.

The substrata of a cactus pot is ideally composed of pieces of broken bricks at the bottom, followed by a layer of charcoal above the bricks, and then coarse sand and pebbles above the charcoal. Leaf mould is the best manure.

Grafting cacti is very simple. A very small piece of the cactus plant should be stuck with tape to the plant that needs grafting. The smaller the piece, the easier it is to graft. To reproduce cacti, one has to simply cut off a piece of the cactus, allow it to dry for a few days, and then place it over the cacti substrate. It will automatically develop roots.

It is very easy to differentiate between cacti and other plants that look like cacti. All cacti have fine hair at the base of each thorn. The so-called “thorns” are in fact highly modified leaves which prevent loss of water through transpiration. If one ever gets pricked by cacti thorns, one should take tape, place it over the area where the thorns have penetrated the skin, and then peel it off. All of the thorns will get stuck to the tape and will be removed.

The first paragraph provides all of the following information EXCEPT __________.

"Cacti" by Ami Dave (2013)

Cacti are plants suited to the desert, and we must always keep this factor in mind when growing ornamental cacti in our gardens, for it helps us provide cacti with conditions that allow them to survive and thrive. For example, a cactus should never be watered over its body, as it will start to rot. This is because it is covered with a waxy coating which prevents water loss through evaporation. When one waters the cactus over its body, the waxy coating is washed away and the plant begins to rot. The amount of water that one must supply to the cactus is very much dependent upon the season and upon the climate of the place. During the summer season one should water cacti every four days, whereas in the rainy season, once every fifteen days is quite enough.

Cacti need a minimum of two and a half hours of sunlight per day; however, they should not be kept in the sun all day because they may wrinkle when exposed to too much bright sunlight. Unlike other plants, cacti produce carbon dioxide during the day and oxygen during the night, so they are ideal plants to be kept in bedrooms to freshen up the air at night.

If a cactus is to thrive and prosper, the size of the pot in which it is grown needs to be monitored carefully. The pot should always be a little smaller than the plant itself because it is only when the plant has to struggle to survive that it will thrive. If the pot is too spacious and the plant does not need to struggle, chances are that the cactus will die. Similarly, if a cactus shows no signs of growth, stop watering it. Watering should be resumed only when the plant begins to grow again.

The substrata of a cactus pot is ideally composed of pieces of broken bricks at the bottom, followed by a layer of charcoal above the bricks, and then coarse sand and pebbles above the charcoal. Leaf mould is the best manure.

Grafting cacti is very simple. A very small piece of the cactus plant should be stuck with tape to the plant that needs grafting. The smaller the piece, the easier it is to graft. To reproduce cacti, one has to simply cut off a piece of the cactus, allow it to dry for a few days, and then place it over the cacti substrate. It will automatically develop roots.

It is very easy to differentiate between cacti and other plants that look like cacti. All cacti have fine hair at the base of each thorn. The so-called “thorns” are in fact highly modified leaves which prevent loss of water through transpiration. If one ever gets pricked by cacti thorns, one should take tape, place it over the area where the thorns have penetrated the skin, and then peel it off. All of the thorns will get stuck to the tape and will be removed.

The passage addresses all of the following EXCEPT __________.

"Darwinism's Effect on Science" by Matthew Minerd (2014)

For much of the history of human thought, the sciences have studied subjects that seemed to be eternal and unchanging. Even the basic laws of the Nile’s flooding were investigated in the hopes of finding never-altering laws. Similarly, the scientific investigations of the ancient Near East and Greece into the regular laws of the stars ultimately looked for constant patterns. This overall pattern of scientific reasoning has left deep marks on the minds of almost all thinkers and found its apotheosis in modern physics. From the time of the early renaissance to the nineteenth century, physics represented the ultimate expression of scientific investigation for almost all thinkers. Its static laws appeared to be the unchanging principles of all motion and life on earth. By the nineteenth century, it had appeared that only a few details had to be “cleared up” before all science was basically known.

In many ways, this situation changed dramatically with the arrival of Darwinism. It would change even more dramatically in early twentieth-century physics as well. Darwin’s theories of evolution challenged many aspects of the “static” worldview. Even those who did not believe that a divine being created an unchanging world were shaken by the new vistas opened up to science by his studies. It had been a long-accepted inheritance of Western culture to believe that the species of living organisms were unchanging in nature. Though there might be many different kinds of creatures, the kinds themselves were not believed to change. The thesis of a universal morphing of types shattered this cosmology, replacing the old world-view with a totally new one. Among the things that had to change in light of Darwin’s work was the very view of science held by most people.

According to the passage, what is the source of modern science?