Adapted from "Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness" by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathematical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same overt characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are twenty percent more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species are all that is needed to determine relatedness. 

The differences produced by divergent evolution observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

Which of the following choices represents the primary difficulty encountered in studies of interrelatedness based on physical features?

Adapted from "Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness" by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathematical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same overt characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are twenty percent more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species are all that is needed to determine relatedness. 

The differences produced by divergent evolution observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

According to the passage, which of the following is an environmental pressure that can result in species adaptation and evolution?

Adapted from "Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness" by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathematical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same overt characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are twenty percent more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species are all that is needed to determine relatedness. 

The differences produced by divergent evolution observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

According to the passage, the hemoglobin structure of a bat is most similar to which of the following animals?

Adapted from "Taking a Second Look: An Analysis of Genetic Markers in Species Relatedness" by Joseph Ritchie (2014)

Phylogenetics is the study of genetic composition in various species and is used by evolutionary biologists to investigate similarities in the molecular sequences of proteins in varying organisms. The amino acid sequences that build proteins are used to construct mathematical matrices that aid in determining evolutionary ties through the investigation of percentage similarities. The study of these matrices helps to expose evolutionary relationships between species that may not have the same overt characteristics.

Species adapt and evolve based on the pressures that exist in their environment. Climate, food source, and habitat availability are only a few factors that act on species adaptation. These stressors can alter the physical characteristics of organisms. This divergence in evolution has made it difficult to determine the interrelatedness of organisms by analyzing their physical characteristics alone.

For instance, looking only at physical characteristics, the ghost bat resembles a pigeon more than a spider monkey; however, phylogenetics has found that the amino acid sequences that construct the beta hemoglobin molecules of bats are twenty percent more similar to those of mammalian primates than those of birds. This helps reject the assumption that common physical characteristics between species are all that is needed to determine relatedness. 

The differences produced by divergent evolution observed in the forest-dwelling, arboreal spider monkey and the nocturnal, airborne ghost bat can be reconciled through homology. Homologous characteristics are anatomical traits that are similar in two or more different species. For instance, the bone structure of a spider monkey’s wrist and fingers greatly resembles that of a bat’s wing or even a whale’s fin. These similarities are reinforced by phylogenetic evidence that supports the idea that physically dissimilar species can be evolutionarily related through anatomical and genetic similarities.

According to the passage, which of the following does a bat most physically resemble?

Adapted from The Effects of Cross & Self-Fertilisation in the Vegetable Kingdom by Charles Darwin (1876)

As it is impossible to exclude such minute pollen-carrying insects as Thrips, flowers which it was intended to fertilise with their own pollen may sometimes have been afterwards crossed with pollen brought by these insects from another flower on the same plant; but as we shall hereafter see, a cross of this kind does not produce any effect, or at most only a slight one. When two or more plants were placed near one another under the same net, as was often done, there is some real though not great danger of the flowers which were believed to be self-fertilised being afterwards crossed with pollen brought by Thrips from a distinct plant. I have said that the danger is not great because I have often found that plants which are self-sterile, unless aided by insects, remained sterile when several plants of the same species were placed under the same net. If, however, the flowers which had been presumably self-fertilised by me were in any case afterwards crossed by Thrips with pollen brought from a distinct plant, crossed seedlings would have been included amongst the self-fertilised; but it should be especially observed that this occurrence would tend to diminish and not to increase any superiority in average height, fertility, etc., of the crossed over the self-fertilised plants.

As the flowers which were crossed were never castrated, it is probable or even almost certain that I sometimes failed to cross-fertilise them effectually, and that they were afterwards spontaneously self-fertilised. This would have been most likely to occur with dichogamous species, for without much care it is not easy to perceive whether their stigmas are ready to be fertilised when the anthers open. But in all cases, as the flowers were protected from wind, rain, and the access of insects, any pollen placed by me on the stigmatic surface whilst it was immature, would generally have remained there until the stigma was mature; and the flowers would then have been crossed as was intended. Nevertheless, it is highly probable that self-fertilised seedlings have sometimes by this means got included amongst the crossed seedlings. The effect would be, as in the former case, not to exaggerate but to diminish any average superiority of the crossed over the self-fertilised plants.

Errors arising from the two causes just named, and from others,—such as some of the seeds not having been thoroughly ripened, though care was taken to avoid this error—the sickness or unperceived injury of any of the plants,—will have been to a large extent eliminated, in those cases in which many crossed and self-fertilised plants were measured and an average struck. Some of these causes of error will also have been eliminated by the seeds having been allowed to germinate on bare damp sand, and being planted in pairs; for it is not likely that ill-matured and well-matured, or diseased and healthy seeds, would germinate at exactly the same time. The same result will have been gained in the several cases in which only a few of the tallest, finest, and healthiest plants on each side of the pots were measured.

Kolreuter and Gartner have proved that with some plants several, even as many as from fifty to sixty, pollen-grains are necessary for the fertilisation of all the ovules in the ovarium. Naudin also found in the case of Mirabilis that if only one or two of its very large pollen-grains were placed on the stigma, the plants raised from such seeds were dwarfed. I was therefore careful to give an amply sufficient supply of pollen, and generally covered the stigma with it; but I did not take any special pains to place exactly the same amount on the stigmas of the self-fertilised and crossed flowers. After having acted in this manner during two seasons, I remembered that Gartner thought, though without any direct evidence, that an excess of pollen was perhaps injurious. It was therefore necessary to ascertain whether the fertility of the flowers was affected by applying a rather small and an extremely large quantity of pollen to the stigma. Accordingly a very small mass of pollen-grains was placed on one side of the large stigma in sixty-four flowers of Ipomoea purpurea, and a great mass of pollen over the whole surface of the stigma in sixty-four other flowers. In order to vary the experiment, half the flowers of both lots were on plants produced from self-fertilised seeds, and the other half on plants from crossed seeds. The sixty-four flowers with an excess of pollen yielded sixty-one capsules; and excluding four capsules, each of which contained only a single poor seed, the remainder contained on an average 5.07 seeds per capsule. The sixty-four flowers with only a little pollen placed on one side of the stigma yielded sixty-three capsules, and excluding one from the same cause as before, the remainder contained on an average 5.129 seeds. So that the flowers fertilised with little pollen yielded rather more capsules and seeds than did those fertilised with an excess; but the difference is too slight to be of any significance. On the other hand, the seeds produced by the flowers with an excess of pollen were a little heavier of the two; for 170 of them weighed 79.67 grains, whilst 170 seeds from the flowers with very little pollen weighed 79.20 grains. Both lots of seeds having been placed on damp sand presented no difference in their rate of germination. We may therefore conclude that my experiments were not affected by any slight difference in the amount of pollen used; a sufficiency having been employed in all cases.

In the fourth paragraph, the information about the work of Kolreuter and Gartner serves to __________.

"Darwin and His Influence" by Joseph Ritchie (2014)

In this passage, “selection” refers to traits that are selected for and passed on to later generations, and “species” refers to organisms that share a common ancestor and can produce viable offspring with one another.

     Early in the nineteenth century, scientists sought to understand the differences in the earth’s flora and fauna from their archeological ancestors. The prevailing view at the time was that the differences between current and previous species were unremarkable deviations from their Platonic ideal forms. This theory hinged upon the ideals of the religious-based “created kinds” theory, which state that individuals of today are products of the organisms that were present at the earth’s creation, the result of an intelligent designer. Furthermore, these individuals believed that the differences between organisms could be explained by unseen geological and astrological forces acting on organisms slowly, throughout time. Other scientists also believed that individuals had the ability to change within their lifetimes and pass on traits to their offspring efficiently and quickly through a single generation.

     Charles Darwin and other biologists, such as Alfred Wallace, were not greatly influenced by these views and hypotheses. Their propositions stated that species evolve over many generations, due to the selective pressures of their given environments. This evolution could result in the generation of divergent traits, as well as speciation and separation from the original ancestral species. The concept that organisms were not finite or present since creation was very controversial to the scientists of the period. Some saw such an idea as unsupportable, while others perceived it as heretical and fanatical.

     Darwin set out to find support for his theory through his work, On the Origins of Species by Means of Natural Selection. He was influenced by archeological discoveries of species, which appeared to have vastly different physiological appearances from present-day organisms. Darwin decided to sail around the world on a Royal Navy ship named the H.M.S. Beagle. During his travels, he was taken to the Pacific islands of the Galapagos archipelago. The volcanic islands followed a patterned distribution on either side of the Equator. The landscapes of each island varied, with different observable flora and fauna. Through scientific observations, Darwin noticed subtle variations of finches on different islands. Some finches had large hard beaks, while others had slender beaks. Beaks were differentiated from island to island. After careful study, Darwin noticed that the beaks seemed to match the food source on each island. The large beaks were specialized for breaking open hard-shelled nuts, while the slender beaks were specialized for eating certain fruits that were abundant. Darwin hypothesized that an ancestral species of finch landed on the islands, and that over generations they became adapted to the locally abundant food sources. 

     Darwin compiled multiple instances of natural selection and incorporated discoveries made by archeologists and physiologists. He surmised that species evolve over time due to the selective pressures of their respective habitats. These events occur slowly over many generations. Each species selects for advantageous traits among its members. Over time, traits selected as advantageous by environmental pressures and stressors become commonplace in the species. This niche-forming process specializes species by rewarding those with traits most suitable for reproductive success. These traits may progress into speciation of the original species, which results in the eventual development of an entirely new species. Darwin’s theory was met with opposition at the time of its publication, and the theory of evolution remains a controversial topic in several arenas of debate.

What is the main point of the first and second paragraphs?

"Darwin and His Influence" by Joseph Ritchie (2014)

In this passage, “selection” refers to traits that are selected for and passed on to later generations, and “species” refers to organisms that share a common ancestor and can produce viable offspring with one another.

     Early in the nineteenth century, scientists sought to understand the differences in the earth’s flora and fauna from their archeological ancestors. The prevailing view at the time was that the differences between current and previous species were unremarkable deviations from their Platonic ideal forms. This theory hinged upon the ideals of the religious-based “created kinds” theory, which state that individuals of today are products of the organisms that were present at the earth’s creation, the result of an intelligent designer. Furthermore, these individuals believed that the differences between organisms could be explained by unseen geological and astrological forces acting on organisms slowly, throughout time. Other scientists also believed that individuals had the ability to change within their lifetimes and pass on traits to their offspring efficiently and quickly through a single generation.

     Charles Darwin and other biologists, such as Alfred Wallace, were not greatly influenced by these views and hypotheses. Their propositions stated that species evolve over many generations, due to the selective pressures of their given environments. This evolution could result in the generation of divergent traits, as well as speciation and separation from the original ancestral species. The concept that organisms were not finite or present since creation was very controversial to the scientists of the period. Some saw such an idea as unsupportable, while others perceived it as heretical and fanatical.

     Darwin set out to find support for his theory through his work, On the Origins of Species by Means of Natural Selection. He was influenced by archeological discoveries of species, which appeared to have vastly different physiological appearances from present-day organisms. Darwin decided to sail around the world on a Royal Navy ship named the H.M.S. Beagle. During his travels, he was taken to the Pacific islands of the Galapagos archipelago. The volcanic islands followed a patterned distribution on either side of the Equator. The landscapes of each island varied, with different observable flora and fauna. Through scientific observations, Darwin noticed subtle variations of finches on different islands. Some finches had large hard beaks, while others had slender beaks. Beaks were differentiated from island to island. After careful study, Darwin noticed that the beaks seemed to match the food source on each island. The large beaks were specialized for breaking open hard-shelled nuts, while the slender beaks were specialized for eating certain fruits that were abundant. Darwin hypothesized that an ancestral species of finch landed on the islands, and that over generations they became adapted to the locally abundant food sources. 

     Darwin compiled multiple instances of natural selection and incorporated discoveries made by archeologists and physiologists. He surmised that species evolve over time due to the selective pressures of their respective habitats. These events occur slowly over many generations. Each species selects for advantageous traits among its members. Over time, traits selected as advantageous by environmental pressures and stressors become commonplace in the species. This niche-forming process specializes species by rewarding those with traits most suitable for reproductive success. These traits may progress into speciation of the original species, which results in the eventual development of an entirely new species. Darwin’s theory was met with opposition at the time of its publication, and the theory of evolution remains a controversial topic in several arenas of debate.

The second paragraph best illustrates which of the following statements?

Adapted from Ice-Caves of France and Switzerland by George Forrest Browne (1865)

This account states that the cave is in the county of Thorn, among the lowest spurs of the Carpathians. The entrance, which faces the north, and is exposed to the cold winds from the snowy part of the Carpathian range, is eighteen fathoms high and nine broad; and the cave spreads out laterally, and descends to a point fifty fathoms below the entrance, where it is twenty-six fathoms in breadth, and of irregular height. Beyond this no one had at that time penetrated, on account of the unsafe footing, although many distant echoes were returned by the farther recesses of the cave; indeed, to get even so far as this, much step-cutting was necessary.

When the external frost of winter comes on, the account proceeds, the effect in the cave is the same as if fires had been lighted there: the ice melts, and swarms of flies and bats and hares take refuge in the interior from the severity of the winter. As soon as spring arrives, the warmth of winter disappears from the interior, water exudes from the roof and is converted into ice, while the more abundant supplies which pour down on to the sandy floor are speedily frozen there. In the dog-days, the frost is so intense that a small icicle becomes in one day a huge mass of ice; but a cool day promptly brings a thaw, and the cave is looked upon as a barometer, not merely feeling, but also presaging, the changes of weather. The people of the neighborhood, when employed in field-work, arrange their labour so that the mid-day meal may be taken near the cave, when they either ice the water they have brought with them, or drink the melted ice, which they consider very good for the stomach. It had been calculated that six hundred weekly carts would not be sufficient to keep the cavern free from ice. The ground above the cave is peculiarly rich in grass.

In explanation of these phenomena, Bell threw out the following suggestions, which need no comment. The earth being of itself cold and damp, the external heat of the atmosphere, by partially penetrating into the ground, drives in this native cold to the inner parts of the earth, and makes the cold there more dense. On the other hand, when the external air is cold, it draws forth towards the surface the heat there may be in the inner part of the earth, and thus makes caverns warm. In support and illustration of this view, he states that in the hotter parts of Hungary, when the people wish to cool their wine, they dig a hole two feet deep, and place in it the flagon of wine, and, after filling up the hole again, light a blazing fire upon the surface, which cools the wine as if the flagon had been laid in ice. He also suggests that possibly the cold winds from the Carpathians bring with them imperceptible particles of snow, which reach the water of the cave, and convert it into ice. Further, the rocks of the Carpathians abound in salts, niter, alum, etc., which may, perhaps, mingle with such snowy particles, and produce the ordinary effect of the snow and salt in the artificial production of ice.

Which of the following sentences best describes the function of the first paragraph within the passage as a whole?

Adapted from Ice-Caves of France and Switzerland by George Forrest Browne (1865)

This account states that the cave is in the county of Thorn, among the lowest spurs of the Carpathians. The entrance, which faces the north, and is exposed to the cold winds from the snowy part of the Carpathian range, is eighteen fathoms high and nine broad; and the cave spreads out laterally, and descends to a point fifty fathoms below the entrance, where it is twenty-six fathoms in breadth, and of irregular height. Beyond this no one had at that time penetrated, on account of the unsafe footing, although many distant echoes were returned by the farther recesses of the cave; indeed, to get even so far as this, much step-cutting was necessary.

When the external frost of winter comes on, the account proceeds, the effect in the cave is the same as if fires had been lighted there: the ice melts, and swarms of flies and bats and hares take refuge in the interior from the severity of the winter. As soon as spring arrives, the warmth of winter disappears from the interior, water exudes from the roof and is converted into ice, while the more abundant supplies which pour down on to the sandy floor are speedily frozen there. In the dog-days, the frost is so intense that a small icicle becomes in one day a huge mass of ice; but a cool day promptly brings a thaw, and the cave is looked upon as a barometer, not merely feeling, but also presaging, the changes of weather. The people of the neighborhood, when employed in field-work, arrange their labour so that the mid-day meal may be taken near the cave, when they either ice the water they have brought with them, or drink the melted ice, which they consider very good for the stomach. It had been calculated that six hundred weekly carts would not be sufficient to keep the cavern free from ice. The ground above the cave is peculiarly rich in grass.

In explanation of these phenomena, Bell threw out the following suggestions, which need no comment. The earth being of itself cold and damp, the external heat of the atmosphere, by partially penetrating into the ground, drives in this native cold to the inner parts of the earth, and makes the cold there more dense. On the other hand, when the external air is cold, it draws forth towards the surface the heat there may be in the inner part of the earth, and thus makes caverns warm. In support and illustration of this view, he states that in the hotter parts of Hungary, when the people wish to cool their wine, they dig a hole two feet deep, and place in it the flagon of wine, and, after filling up the hole again, light a blazing fire upon the surface, which cools the wine as if the flagon had been laid in ice. He also suggests that possibly the cold winds from the Carpathians bring with them imperceptible particles of snow, which reach the water of the cave, and convert it into ice. Further, the rocks of the Carpathians abound in salts, nitre, alum, etc., which may, perhaps, mingle with such snowy particles, and produce the ordinary effect of the snow and salt in the artificial production of ice.

The second paragraph establishes all of the following EXCEPT __________.

Adapted from "Recent Views as to Direct Action of Light on the Colors of Flowers and Fruits" in Tropical Nature, and Other Essays by Alfred Russel Wallace (1878)

The theory that the brilliant colors of flowers and fruits is due to the direct action of light has been supported by a recent writer by examples taken from the arctic instead of from the tropical flora. In the arctic regions, vegetation is excessively rapid during the short summer, and this is held to be due to the continuous action of light throughout the long summer days. “The further we advance towards the north, the more the leaves of plants increase in size as if to absorb a greater proportion of the solar rays. M. Grisebach says that during a journey in Norway he observed that the majority of deciduous trees had already, at the 60th degree of latitude, larger leaves than in Germany, while M. Ch. Martins has made a similar observation as regards the leguminous plants cultivated in Lapland.” The same writer goes on to say that all the seeds of cultivated plants acquire a deeper color the further north they are grown, white haricots becoming brown or black, and white wheat becoming brown, while the green color of all vegetation becomes more intense. The flowers also are similarly changed: those which are white or yellow in central Europe becoming red or orange in Norway. This is what occurs in the Alpine flora, and the cause is said to be the same in both—the greater intensity of the sunlight. In the one the light is more persistent, in the other more intense because it traverses a less thickness of atmosphere.

Admitting the facts as above stated to be in themselves correct, they do not by any means establish the theory founded on them; and it is curious that Grisebach, who has been quoted by this writer for the fact of the increased size of the foliage, gives a totally different explanation of the more vivid colors of Arctic flowers. He says, “We see flowers become larger and more richly colored in proportion as, by the increasing length of winter, insects become rarer, and their cooperation in the act of fecundation is exposed to more uncertain chances.” (Vegetation du Globe, col. i. p. 61—French translation.) This is the theory here adopted to explain the colors of Alpine plants, and we believe there are many facts that will show it to be the preferable one. The statement that the white and yellow flowers of temperate Europe become red or golden in the Arctic regions must we think be incorrect. By roughly tabulating the colors of the plants given by Sir Joseph Hooker as permanently Arctic, we find among fifty species with more or less conspicuous flowers, twenty-five white, twelve yellow, eight purple or blue, three lilac, and two red or pink; showing a very similar proportion of white and yellow flowers to what obtains further south.

Data gathered from a survey of the colors of different types of Arctic flowers is presented __________.