Biochemistry : Biochemistry

Study concepts, example questions & explanations for Biochemistry

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Example Questions

Example Question #911 : Biochemistry

Which of the following metabolic processes directly requires oxygen?

Possible Answers:

Pyruvate dehydrogenase complex

Glycolysis

Citric acid cycle

Tricarboxylic acid cycle

Electron transport system

Correct answer:

Electron transport system

Explanation:

The electron transport system is the only metabolic process listed that directly requires molecular oxygen. Oxygen is the final electron acceptor (it is one of the most electronegative atoms in our bodies) in the electron transport chain. This is the same as saying that oxygen has the highest reduction potential, and is capable of receiving electons. If oxygen is not present to accept the electron from the final enzyme complex in the inner mitochondrial membrane, then electron transport will be inhibited and thus no ATP will be produced via chemiosmosis.

Note that the Krebs cycle, citric acid cycle, and tricarboxylic acid cycle (TCA cycle) all refer to the same process, and do not directly require oxygen (oxygen is neither a reactant nor a product in any of the steps). However, oxygen is indirectly required, as there is no point to this cycle without subsequent oxidative phosphorylation. Thus in the absence of oxygen, of the choices shown, only glycolysis will proceed uninhibited.

Example Question #45 : Electron Transport And Oxidative Phosphorylation

Which phase of cellular respiration accounts for the highest production of energy?

Possible Answers:

Krebs Cycle

Glycolysis

Electron transport chain

Fermentation

Correct answer:

Electron transport chain

Explanation:

The electron transport chain generates the most ATP out of all three major phases of cellular respiration. Glycolysis produces a net of 2 ATP per molecule of glucose. In the Krebs cycle, there is one GTP (which is an ATP equivalent) generate in the conversion of succinyl-CoA to succinate. However, the majority of the ATP produced during cellular respiration occurs at the electron transport chain by the reduction of coenzymes NADH and . This subsequently results in the generation of the proton motive force which ATP synthase uses to generate ATP from one unit of ADP and one unit of inorganic phosphate.

Example Question #1 : Other Oxidatative Phosphorylation Concepts

Where does oxidative phosphorylation take place in a prokaryote?

Possible Answers:

Endoplasmic reticulum

Cell membrane

Nucleus

Mitochondria

Cell wall

Correct answer:

Cell membrane

Explanation:

In a eukaryote, oxidative phosphorylation occurs in the mitochondria because this is where the cell is able to set up a proton gradient.  However, prokaryotes do not have mitochondria - they have no membrane-bound organelles at all.  Therefore, the proton gradient that drives ATP synthesis in oxidative phosphorylation is created across the cell membrane.

Example Question #45 : Electron Transport And Oxidative Phosphorylation

If an uncoupler allows for excess buildup of protons inside of the mitochondrial matrix, which of the following processes will be inhibited?

Possible Answers:

Electron transport chain

Glycolysis

Krebs cycle

None of these will be inhibited

Pyruvate dehydrogenase complex

Correct answer:

None of these will be inhibited

Explanation:

With the excess buildup of protons in the matrix, the only thing that will be inhibited is the generation of ATP by ATP synthase. The other processes in cellular respiration focus more on creation of high energy electron carriers, and therefore will continue as normal.

Example Question #46 : Electron Transport And Oxidative Phosphorylation

In oxidative phosphorylation, electrons are transferred from NADH and FADH2 to electron acceptors.  This is one example of an oxidative process.  Which of the following processes within another biochemical process could be considered oxidation?

Possible Answers:

Removing hydrogens

Removing oxygen

Adding electrons

Adding hydrogens

None of these choices are oxidation

Correct answer:

Removing hydrogens

Explanation:

Predictably, a gain in oxygen is known as oxidation, while a loss of oxygen is reduction.  Hydrogen follows the opposite pattern as oxidation: removing hydrogen is oxidation, while gaining hydrogen is reduction.  Therefore, the correct answer is that removing hydrogens is considered oxidation.

In order to differentiate between oxidation and reduction in terms of electron transfer, it is helpful to remember the phrase "LEO the tiger says GER".  A loss of electrons is oxidation, while a gain of electrons is reduction. 

Example Question #46 : Electron Transport And Oxidative Phosphorylation

What is the major role of oxidative phosphorylation in cellular respiration?

Possible Answers:

To oxidize glucose to pyruvate.

To produce  from the high energy electron carriers  and .

To produce the high energy electron carriers  and .

None of these choices are correct.

To produce  through substrate level phosphorylation.

Correct answer:

To produce  from the high energy electron carriers  and .

Explanation:

During oxidative phosphorylation,  is created from the previously created  and . All of the other choices describe other parts of cellular respiration. In glycolysis, glucose is oxidized to pyruvate. In both glycolysis and the Krebs cycle, substrate level phosphorylation occurs. Likewise,  and  are produced during glycolysis and the Krebs cycle, but not during oxidative phosphorylation, where these high energy electrons are passed down a series of membrane-bound enzymes to oxygen meanwhile protons are pumped into the intermembrane space of the mitochondria.

Example Question #1 : Other Oxidatative Phosphorylation Concepts

Which of the following steps represents a correct source of carbon dioxide during aerobic respiration?

Possible Answers:

Glycolysis

Citric acid cycle

Oxidative phosphorylation

All of these steps are sources of carbon dioxide

Fermentation

Correct answer:

Citric acid cycle

Explanation:

To answer this question, it's important to have familiarity with the process of aerobic respiration.

In the first major pathway, glycolysis is split into two molecules of pyruvate through a series of reactions. Along the way, high-energy electron carriers are produced, along with ATP.

In the next major step, pyruvate is transferred into mitochondria, where it is decarboxylated into acetyl-CoA, with a concomitant production of NADH and carbon dioxide. Hence, this is a step that produces carbon dioxide. However, it is not found in the answer choices.

The third major component of aerobic respiration is the citric acid cycle. Here, the acetyl-CoA from the previous step is completely ripped apart to provide a great deal of energy. This huge amount of energy that is liberated is because the two carbon atoms that make up the acetyl group of acetyl-CoA become completely oxidized into two molecules of carbon dioxide. In terms of the energy liberated from the cycle, ATP along with a good deal of high-energy electron carriers are produced. This component of aerobic respiration is indeed a source of carbon dioxide.

Fermentation is an anaerobic pathway and is thus not the correct answer. Depending on the organism, carbon dioxide may or may not be produced.

Finally, aerobic respiration culminates in oxidative phosphorylation. Here, all of the high energy carriers from the previous steps are fed into the electron transport chain, resulting in the production of a great amount of ATP, the main energy currency of cells. In this final major step, it is oxygen gas that is produced, not carbon dioxide.

Example Question #51 : Electron Transport And Oxidative Phosphorylation

Which of the following correctly matches the phase of cellular respiration with its location in the cell?

Possible Answers:

Pyruvate dehydrogenase complex . . . mitochondrial matrix

Electron transport chain . . . cytoplasm

Electron transport chain . . . mitochondrial matrix

Krebs cycle . . . intermembrane space

Glycolysis . . . mitochondrial matrix

Correct answer:

Pyruvate dehydrogenase complex . . . mitochondrial matrix

Explanation:

Glycolysis occurs in the cytoplasm. Pyruvate dehydrogenase complex occurs in the mitochondrial matrix. Krebs cycle occurs in the mitochondrial matrix. Electron transport chain protein complexes are embedded in the mitochondrial inner membrane.

Example Question #1 : Citric Acid Cycle

Which enzyme catalyzes the conversion of citrate to isocitrate?

Possible Answers:

Aldolase

Citrate isomerase

Aconitase

Citrate synthase

Phosphate

Correct answer:

Aconitase

Explanation:

Aconitase is the enzyme that catalyzes the conversion of citrate to isocitrate. This essential enzyme is vital in energy production, as it acts like an iron regulatory protein. The conversion of citrate to isocitrate is important since it is needed to react with isocitrate dehydrogenase.

Example Question #2 : Citric Acid Cycle

What is the name of the enzyme that incorporate Acetyl-CoA into the citric acid cycle?

Possible Answers:

Pyruvate dehydrogenase

Pyruvate carboxylase

Citrate synthase

Acetyl-CoA carboxylase

Thiolase

Correct answer:

Citrate synthase

Explanation:

Citrate synthase is the first enzyme of the citric acid cycle. Its role is to condense acetyl-CoA onto oxaloacetate in order to generate citrate.

Acetyl-CoA carboxylase is an enzyme that attaches a carboxyl group to acetyl-CoA in order to generate malonyl-CoA, which plays a role in fatty acid synthesis by contributing two carbons at a time to the growing hydrocarbon chain. Moreover, malonyl-CoA also serves a regulatory role in the breakdown and synthesis of fatty acids. Since it is a major precursor to the synthesis of fatty acids, high levels of it inhibit the breakdown of fatty acids by preventing fatty acids from entering the mitochondria, where they are broken down via beta-oxidation. Thus, malonyl-CoA allows fatty acids to be synethesized without simultaneously being degraded.

Thiolase is an enzyme that condenses two molecules of acetyl-CoA into acetoacetyl-CoA. This molecule is an important intermediate in two important pathways. One is the production of ketone bodies, while the other is the mevalonate pathway, which is an important series of reactions that synthesizes many compounds, such as cholesterol.

Pyruvate dehydrogenase is an enzyme complex that converts pyruvate into acetyl-CoA, thus linking glycolysis with the citric acid cycle.

Pyruvate carboxylase is an enzyme that adds a carboxyl group to pyruvate in order to generate oxaloacetate. This reaction can be used either to generate oxaloacetate for use in the kreb's cycle, or in the gluconeogenesis pathway to synthesize glucose from a variety of substrates.

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