Biochemistry : Signal Transduction Pathways

Study concepts, example questions & explanations for Biochemistry

varsity tutors app store varsity tutors android store

Example Questions

Example Question #1 : Second Messengers

Which of the following is not a second messenger?

Possible Answers:

G-protein

diacylglycerol

cAMP

Calcium

cGMP

Correct answer:

G-protein

Explanation:

There are many types of second messengers including diacylglycerol, cAMP, cGMP, calcium, and inositol trisphosphate.  However, a G-protein is part of a pathway that utilizes second messengers, but is not one itself.

Example Question #4 : Second Messengers

How does cAMP regulate the action of Protein kinase A (PKA)?

Possible Answers:

cAMP is initially bound to PKA to prevent its action, and when it dissociates PKA is able to function

Four molecules of cAMP bind to PKA and dissociate it into 2 catalytic subunits and 2 regulatory subunits

Four molecules of cAMP bind only to the catalytic subunits of PKA which allows them to function

cAMP phosphorylates PKA which sets it into action.

cAMP does not affect the action of PKA

Correct answer:

Four molecules of cAMP bind to PKA and dissociate it into 2 catalytic subunits and 2 regulatory subunits

Explanation:

The binding of four cAMP molecules to PKA dissociates it into two regulatory subunits and two catalytic subunits.  The actual sites that the cAMP binds to, however, are allosteric sites - they are not directly on the regulatory sites or the catalytic sites.

Example Question #1 : Second Messengers

cAMP is one of the most fundamentally important 2nd degree messengers in the cell, released by a variety of receptors.

In a phosphorylation system, what is the direct purpose of cyclic AMP, what does protein does this secondary messenger activate?

Possible Answers:

Glycogen synthase

Glycogen phosphorylase

Phosphoprotein phosphatase inhibitor

Phosphorylase kinase B

Protein kinase A

Correct answer:

Protein kinase A

Explanation:

A phosphorylation cascade, involves many different steps and complicated interactions between kinases, phosphorylases, and phosphatases. In this case, the enzymes mentioned relate to the phosphorylation and dephosphorylation cascade involved with glycogen synthesis and degradation.

When a beta-adrenergic receptor or glucagon receptor is activated, two types of G-protein couple receptors, a G-protein is phosphorylated and disassociates GTP to act upon the enzyme, Adenylate cyclase, to synthesize cylic AMP (cAMP) from ATP.

This first step following the release of cAMP is that it acts upon protein kinase A by attaching to its two R subunits (requiring 4 cAMP) while releasing two C subunits. The C subunits function as other chemical messengers in the cell, acting upon multiple different enzymes to ultimately increase the rate of glycogen degradation and decrease the rate of glycogen synthesis.

Example Question #41 : Signal Transduction Pathways

Which of the following molecules is not considered to be a second messenger?

Possible Answers:

cAMP

All of these are second messengers

Diacylglycerol (DAG)

Calcium ion

Inositol 1,4,5 triphosphate (IP3)

Correct answer:

All of these are second messengers

Explanation:

Second messengers are molecules that act within cells to either increase or decrease activity or amount of a final molecule. All of the answer choices are second messengers in various pathways.

Example Question #42 : Signal Transduction Pathways

What is one of the main purposes of second messenger molecules?

Possible Answers:

They allow a single signal to cause endless, unceasing production of some final product

They allow for signifiant amplification of a signal within a cell

They allow receptors to be receptive to multiple types of ligands

They allow ligands to bind to multiple types of receptors

They allow for the production of only one kind of molecule

Correct answer:

They allow for signifiant amplification of a signal within a cell

Explanation:

When a ligand binds to its associated receptor, the signal is passed into the cell and on to a distinct final molecule (often DNA transcription factors). Second messengers allow for significant amplification of a single ligand/receptor signal in order to cause mass change within a cell, and therefore within the body.

Example Question #43 : Signal Transduction Pathways

What is the function of the enzyme adenylate cyclase often seen in signal transduction pathways?

Possible Answers:

Conversion of ATP to cAMP

Conversion of ATP to ADP

Conversion of GTP to GDP

Conversion of cAMP to ATP

Conversion of GDP to GTP 

Correct answer:

Conversion of ATP to cAMP

Explanation:

Often following the activation of a G protein, ATP is converted to the second messenger, cAMP, by adenylate cyclase. This propagates the amplification of the signal transduction.

Example Question #44 : Signal Transduction Pathways

How does cAMP exert its effects within a cell?

Possible Answers:

cAMP is hydrolyzed to ATP, which phosphorylates target molecules

cAMP acts directly upon DNA to cause alterations in gene expression

cAMP activates protein kinase A, which then acts upon other target molecules

cAMP acts directly on transcription factors, which then go on to cause alterations in gene expression

cAMP closes chloride channels, causing a change in the cellular membrane potential

Correct answer:

cAMP activates protein kinase A, which then acts upon other target molecules

Explanation:

After adenylate cyclase converts ATP to cAMP, this second messenger goes on to bind to protein kinase A. Unactivated protein kinase A requires cAMP in order to become activated, at which point it can phosphorylate certain threonine and serine residues on target molecules.

Example Question #45 : Signal Transduction Pathways

How does protein kinase A become activated?

Possible Answers:

cAMP binds only to its catalytic subunits causing their dissociation from the regulatory subunits

cAMP dissociates from the regulatory subunits which allows the catalytic subunits to be active

cAMP binds only to its regulatory subunits causing dissociation of its catalytic subunits

cAMP binds to its regulatory subunits and to its catalytic subunits causing dissociation of the now activated catalytic subunits

cAMP dissociates from the catalytic subunits which allows them to be active

Correct answer:

cAMP binds only to its regulatory subunits causing dissociation of its catalytic subunits

Explanation:

In order for protein kinase A to become activated, cAMP must bind to it. PKA has a structure composed of two regulatory subunits and two catalytic subunits all bound together. The catalytic units are active on their own, so in order to work they must simply become dissociated from the regulatory subunits. Thus, cAMP will bind to only the regulatory subunits of PKA which then allows dissociation of the already catalytic subunits.

Example Question #46 : Signal Transduction Pathways

What is the function of phospholipase C?

Possible Answers:

Forms diacylglycerol (DAG) from inositol triphosphate (IP3) and phosphatidylinositol biphosphate (PIP2)

Forms phosphatidylinositol biphosphate (PIP2) from diacylglycerol (DAG) and inositol triphosphate (IP3)

Converts phosphatidylinositol biphosphate (PIP2) into diacylglycerol (DAG) and inositol triphosphate (IP3)

Converts inositol triphosphate (IP3) into phosphatidylinositol biphosphate (PIP2) and diacylglycerol (DAG)

Converts diacylglycerol (DAG) into phosphatidylinositol biphosphate (PIP2) and inositol triphosphate (IP3)

Correct answer:

Converts phosphatidylinositol biphosphate (PIP2) into diacylglycerol (DAG) and inositol triphosphate (IP3)

Explanation:

The function of phospholipase C is to cleave phosphatidylinositol biphosphate (PIP2) into the two second messenger molecules, diacylglycerol (DAG) and inositol triphosphate (IP3). These can then act within signal transduction pathways to amplify ligand/receptor signals.

Example Question #47 : Signal Transduction Pathways

Atrial natriuretic factor and nitric oxide use which molecule as a second messenger to exert their effects?

Possible Answers:

DAG (diacylglycerol)

Calcium

cAMP (cyclic adenosine monophosphate)

IP3 (inositol triphosphate)

cGMP (cyclic guanosine monophosphate)

Correct answer:

cGMP (cyclic guanosine monophosphate)

Explanation:

Atrial natriuretic factor (ANF) and nitric oxide use cGMP as a second messenger to exert their effects. The ANF has guanylyl cyclase activity which converts GTP (guanosine-5'-triphosphate) to cGMP (cyclic guanosine monophosphate). This in turn activates protein kinase G and leads to relaxation of smooth muscle. IP3, calcium and DAG are second messengers in activation pathways of G protein-coupled receptors, as is the case of the epinephrine receptor.

Learning Tools by Varsity Tutors