Virus Structure and Classification (2B)

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MCAT Biological and Biochemical Foundations of Living Systems › Virus Structure and Classification (2B)

Questions 1 - 10
1

In a surveillance study, an unknown respiratory virus (Virus X) was isolated from nasopharyngeal swabs and purified. Treatment of intact virions with 0.1% Triton X-100 reduced infectivity to <1% of baseline, while treatment with RNase A had no effect unless detergent was added first. Viral replication in cultured cells was inhibited by a compound that blocks RNA-dependent RNA polymerase (RdRP). Electron microscopy showed pleomorphic particles with surface projections.

Which classification best fits Virus X based on these observations?

Non-enveloped, double-stranded DNA virus that replicates in the nucleus using host DNA polymerase

Non-enveloped, positive-sense single-stranded RNA virus whose capsid protects it from detergent disruption

Enveloped, double-stranded RNA virus that is resistant to detergents but sensitive to extracellular RNase

Enveloped, positive-sense single-stranded RNA virus that requires an RdRP for genome replication

Explanation

This question tests the ability to classify viruses based on structural features and replication strategy. Virus classification relies on key characteristics: presence/absence of envelope (lipid bilayer), genome type (DNA vs RNA, single vs double-stranded), and replication mechanism. The passage data shows Virus X loses infectivity with detergent (Triton X-100), indicating an enveloped virus whose lipid bilayer is disrupted. RNase only works after detergent treatment, confirming the genome is protected by the envelope and is RNA-based. The RdRP inhibitor blocking replication indicates the virus must synthesize RNA from an RNA template, characteristic of positive-sense ssRNA viruses. Choice B correctly identifies all these features, while choice A incorrectly suggests DNA genome, choice C incorrectly states non-enveloped (contradicting detergent sensitivity), and choice D incorrectly combines envelope presence with RNase sensitivity of intact virions. When classifying viruses experimentally, always check: detergent sensitivity (envelope), nuclease sensitivity patterns (genome type), and polymerase requirements (replication strategy).

2

A respiratory isolate (Virus X) was tested in cultured epithelial cells. Infectivity decreased by 3.5 log10 after 10 minutes of exposure to 70% ethanol, but was unchanged after incubation with RNase A (with intact virions present). When purified virions were treated with a nonionic detergent before RNase A exposure, the viral genome became RNase-sensitive. In a separate assay, viral replication was not inhibited by a DNA polymerase inhibitor that blocks host nuclear DNA synthesis. Based on these observations, which classification best fits Virus X?

Non-enveloped RNA virus that is ethanol-resistant due to a stable protein capsid

Enveloped double-stranded DNA virus that requires host nuclear DNA synthesis to replicate

Enveloped RNA virus whose genome is protected within a lipid envelope and capsid prior to entry

Non-enveloped double-stranded DNA virus that replicates in the nucleus using host DNA polymerase

Explanation

This question tests the ability to classify viruses based on structural features and genome type using experimental data. Virus classification relies on key characteristics: presence/absence of an envelope (lipid bilayer), genome type (DNA vs RNA), and replication strategy. The passage data shows that Virus X loses infectivity with ethanol (indicating an envelope), contains RNA (becomes RNase-sensitive after detergent disrupts the envelope), and doesn't require host DNA synthesis (ruling out DNA viruses dependent on S-phase). These findings point to an enveloped RNA virus whose genome is protected by both the envelope and capsid until detergent treatment exposes it. Choice A incorrectly describes a non-enveloped DNA virus, contradicting both the ethanol sensitivity and RNase data. A key strategy is to systematically evaluate each experimental result against the structural features claimed in each answer choice.

3

An experiment aims to classify Virus BB as enveloped vs non-enveloped. Researchers treat virions with either (i) detergent, (ii) protease, or (iii) RNase, then measure infectivity. Detergent reduces infectivity by 10,000-fold; protease reduces infectivity by 100-fold; RNase has no effect unless detergent is applied first. Which classification best fits the virus described?

Bacterium with an outer membrane and plasmid DNA

Enveloped virus with a protein capsid protecting its genome

Non-enveloped virus with genome exposed on the surface

Prion lacking nucleic acid

Explanation

The skill being tested is using treatment assays to classify virus structure for MCAT. Enveloped viruses protect genomes via lipid and capsid, detergent exposes to enzymes, protease targets surface proteins. Detergent greatly reduces infectivity, protease moderately, RNase only post-detergent, indicating envelope and internal capsid. Answer D is correct as this pattern shows envelope-mediated protection with protein involvement. Distractor B fails by suggesting exposed genome, ignoring RNase resistance intact, a protection misconception. Verify by sequential treatments. Strategize by assessing enzyme access pre/post-disruption.

4

A lab compares two viruses that bind the same cell-surface receptor. Virus A loses infectivity after exposure to ether, while Virus B retains infectivity. Electron microscopy shows Virus A has a surrounding membrane-like layer with surface spikes; Virus B shows only a protein shell. In a plaque assay, Virus A forms plaques only when cells are not pretreated with a lysosomotropic agent that raises endosomal pH; Virus B plaques are unaffected. Based on the passage, how does the structure influence pathogenicity?

Virus B must use reverse transcriptase because it lacks an envelope

Virus A is acid-stable due to its envelope; Virus B is acid-labile due to its capsid

Virus A requires endosomal acidification for membrane fusion; Virus B does not rely on a lipid envelope

Virus B enters only by membrane fusion at the plasma membrane because it lacks spikes

Explanation

The skill being tested is understanding how virus structure influences entry mechanisms and pathogenicity in MCAT biological contexts. Virus classification involves envelope status (affecting solvent sensitivity and entry pathways) and capsid features (like spikes for fusion). The passage details Virus A as ether-sensitive with a membrane and spikes, requiring normal endosomal pH for plaques, while Virus B is ether-resistant with only a protein shell and unaffected by pH changes. The correct answer A is supported because Virus A's envelope necessitates low-pH endosomal fusion, while Virus B's non-enveloped nature allows pH-independent entry, directly linking structure to pathogenicity. A distractor like B fails by reversing acid stability, misconstruing envelopes as protective against acid when they often confer lability. To verify, compare solvent sensitivity with entry inhibitors. Reason by correlating structural assays (EM, solvents) with functional assays (plaque formation) for entry mechanisms.

5

To classify an unknown virus (Virus S), researchers perform a one-step growth experiment. Immediately after infection, adding cycloheximide (a eukaryotic translation inhibitor) prevents accumulation of viral polymerase activity in the cytosol. However, when purified virions are added to a cell-free assay, polymerase activity is detected without new protein synthesis. Viral replication in cells is blocked by an RdRP inhibitor.

What is most likely the method of classification for Virus S based on these data?

Classify as a positive-sense RNA virus because polymerase activity is only produced after translation in host cells

Classify as a DNA virus because cycloheximide blocks host ribosomes needed for viral DNA replication

Classify by capsid symmetry because polymerase detection uniquely identifies helical nucleocapsids

Classify as a negative-sense RNA virus because the virion packages an RdRP detectable without new protein synthesis

Explanation

This question tests classification based on polymerase packaging patterns. Virus classification distinguishes positive-sense from negative-sense RNA viruses by whether they package polymerase in virions. The passage shows polymerase activity in purified virions without new synthesis (pre-packaged enzyme) but no polymerase accumulation when translation is blocked immediately after infection. This pattern is diagnostic of negative-sense RNA viruses, which must package RdRP because their genome cannot be translated directly. Choice B correctly identifies this classification method. Choice A incorrectly suggests positive-sense (which don't package polymerase), choice C incorrectly identifies DNA virus, and choice D incorrectly links polymerase detection to capsid symmetry rather than genome polarity. The key principle: negative-sense RNA viruses must package functional polymerase for initial transcription, while positive-sense RNA viruses synthesize polymerase after translation of their genome.

6

Virus Z was isolated from stool samples. It retained infectivity after 1 hour at pH 3 and after exposure to 0.5% bile salts. Chloroform extraction did not reduce infectivity. Electron microscopy of purified particles showed a symmetric protein shell with no visible outer membrane. Based on the passage, how does the structure most likely influence transmission?

A stable protein capsid supports environmental and GI stability, facilitating fecal–oral transmission

Surface peptidoglycan protects against chloroform, facilitating fecal–oral transmission

A lipid envelope promotes survival in acidic environments, increasing fecal–oral transmission

A segmented genome enables survival in bile salts, facilitating fecal–oral transmission

Explanation

This question tests understanding of how viral structure influences transmission routes and environmental stability. Virus classification reveals that non-enveloped viruses with stable protein capsids are particularly suited for fecal-oral transmission due to their resistance to harsh environmental conditions. The data shows Virus Z survives low pH (stomach acid), bile salts (intestinal detergents), and chloroform (lipid solvent), all indicating a non-enveloped structure confirmed by electron microscopy showing only a protein shell. This robust capsid enables survival through the gastrointestinal tract and in the environment between hosts. Choice A incorrectly claims lipid envelopes promote acid stability when they actually make viruses more fragile. Choice D mentions peptidoglycan, a bacterial cell wall component not found in viruses. The key insight is that fecal-oral transmission selects for structurally stable, non-enveloped viruses.

7

An unknown virus was tested for how it initiates infection. Binding to host cells was reduced 90% by pre-incubating the virus with a monoclonal antibody against a viral surface glycoprotein. Treating virions with a glycosidase that removes N-linked glycans reduced infectivity by 80% but did not disrupt the capsid. Chloroform extraction reduced infectivity by 4 log10. Based on the passage, how does the structure influence pathogenicity?

Envelope glycoproteins (and their glycans) mediate attachment/entry, so disrupting the envelope or glycosylation reduces infectivity

Host antibodies primarily neutralize by degrading viral genomes extracellularly, so glycosidase has no effect on infectivity

A rigid protein capsid alone mediates receptor binding, so glycosidase increases infectivity by exposing binding sites

Viral peptidoglycan is the major antigenic determinant, so chloroform reduces infectivity by dissolving the cell wall

Explanation

This question tests understanding of how viral envelope glycoproteins mediate pathogenicity through attachment and entry. Virus classification recognizes that enveloped viruses use glycoproteins embedded in their lipid bilayer for host cell recognition and entry. The data shows antibody blocks a surface glycoprotein reducing binding, glycosidase treatment (removing sugar modifications) reduces infectivity, and chloroform (disrupting lipids) destroys infectivity - all pointing to an enveloped virus whose glycoproteins are critical for infection. The glycan modifications on these proteins often determine tissue tropism and immune evasion. Choice A incorrectly describes a non-enveloped virus and misinterprets glycosidase effects. Choice C mentions peptidoglycan, a bacterial component not found in viruses. The key insight is that envelope glycoproteins and their post-translational modifications are primary determinants of viral pathogenicity.

8

A newly identified virus is purified and its genome is analyzed. The genome is RNA, and purified genomic RNA introduced into cells produces viral proteins and infectious particles without providing any additional viral proteins. Inhibition of host RNA polymerase II does not block early viral protein synthesis. Which classification best fits the virus described?

Double-stranded DNA virus

Satellite virus requiring a helper virus for replication

Negative-sense single-stranded RNA virus

Positive-sense single-stranded RNA virus

Explanation

The skill being tested is classifying RNA viruses by genome sense and replication autonomy in MCAT biochemistry. Positive-sense ssRNA viruses have genomes acting as mRNA, directly producing proteins and progeny without added enzymes, unlike others needing polymerases. The passage shows purified RNA alone yields proteins and particles, with host pol II inhibition not affecting early synthesis, indicating direct translation. Answer A fits as +ssRNA viruses like poliovirus replicate cytoplasmically without host transcription. Distractor B fails for -ssRNA, requiring polymerase, misconstruing autonomy as negative-sense trait. Verify by transfecting naked genome and monitoring protein production. Reason by assessing if genome functions immediately as mRNA.

9

A virus isolated from blood is sensitive to chloroform and shows a helical nucleocapsid by EM. When infected cells are treated with actinomycin D (inhibits cellular DNA-dependent RNA polymerase II), viral mRNA production is unaffected. However, when cells are treated with a small-molecule inhibitor of viral RNA-dependent RNA polymerase, viral mRNA is abolished. Which classification best fits the virus described?

Enveloped RNA virus requiring an RNA-dependent RNA polymerase

Non-enveloped DNA virus requiring host RNA polymerase II

Prion composed solely of protein

Enveloped DNA virus requiring reverse transcriptase

Explanation

The skill being tested is virus classification via inhibitor responses and structural features for MCAT biological foundations. Viruses are classified by genome (requiring specific polymerases) and envelope (conferring chloroform sensitivity and helical nucleocapsids). The virus is chloroform-sensitive with helical nucleocapsid, unaffected by actinomycin D but blocked by RdRp inhibitor, indicating RNA genome independent of host transcription. Answer A fits as enveloped RNA viruses like paramyxoviruses use viral RdRp for mRNA, matching inhibitor data. Distractor B errs by suggesting host RNA pol II dependence, ignoring actinomycin D insensitivity, a misconception for DNA viruses. Confirm by assaying polymerase inhibitors' effects on replication. Reason by excluding classifications mismatched with structural (EM) and functional (inhibitor) evidence.

10

Researchers isolated an unknown virus (Virus X) from nasal swabs and performed three assays. (i) Infectivity decreased by 3.5 log units after treatment with 0.1% Triton X-100 for 10 min. (ii) Infectivity was unchanged after 30 min at pH 3.0. (iii) In a cell-free translation system, purified viral nucleic acid produced a single polyprotein only when ribosomes were supplied; no DNA-dependent RNA polymerase was required. Which classification best fits the virus described?

Enveloped double-stranded RNA virus

Non-enveloped negative-sense single-stranded RNA virus

Non-enveloped double-stranded DNA virus

Enveloped positive-sense single-stranded RNA virus

Explanation

The skill being tested is the classification of viruses based on their structural features and genomic properties as per MCAT biological foundations. Viruses are classified by envelope presence (affecting detergent sensitivity), genome type (DNA vs RNA, strandedness), and RNA sense (positive vs negative, determining direct translatability). In this passage, Virus X shows detergent sensitivity indicating an envelope, acid stability consistent with some enveloped viruses, and direct translation of its nucleic acid into a polyprotein using only ribosomes, pointing to RNA that functions as mRNA. The correct answer B follows from the data because enveloped viruses are detergent-sensitive, and positive-sense ssRNA genomes can be directly translated without additional polymerases, matching the cell-free system's requirements. A distractor like A fails by assuming a dsDNA genome, misconstruing the lack of need for DNA-dependent RNA polymerase and direct polyprotein production as DNA-based replication. A transferable check is to assess detergent effects for envelopes and translation assays for RNA sense. Additionally, reason by eliminating options that mismatch genome functionality with experimental outcomes.

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